RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 AIMP1Q12904 312 aaKnown RBP18.14■□□□□ 0.49
USP4-206ENST00000461553 DPY19L2Q6NUT2 758 aa18.14■□□□□ 0.49
USP4-206ENST00000461553 COPS6Q7L5N1 327 aa18.14■□□□□ 0.49
USP4-206ENST00000461553 MBIPQ9NS73 344 aa18.14■□□□□ 0.49
USP4-206ENST00000461553 CHPF2Q9P2E5 772 aa18.14■□□□□ 0.49
USP4-206ENST00000461553 RNF123Q5XPI4 1314 aa18.14■□□□□ 0.49
USP4-206ENST00000461553 APLP1P51693 650 aa18.13■□□□□ 0.49
USP4-206ENST00000461553 FKBP4Q02790 459 aaKnown RBP eCLIP18.13■□□□□ 0.49
USP4-206ENST00000461553 C7orf43Q8WVR3 580 aa18.13■□□□□ 0.49
USP4-206ENST00000461553 UTP14AQ9BVJ6 771 aaKnown RBP18.13■□□□□ 0.49
USP4-206ENST00000461553 IFT57Q9NWB7 429 aa18.13■□□□□ 0.49
USP4-206ENST00000461553 VEGFAP15692 232 aaPredicted RBP18.12■□□□□ 0.49
USP4-206ENST00000461553 GNAI1P63096 354 aa18.12■□□□□ 0.49
USP4-206ENST00000461553 FSTL1Q12841 308 aa18.12■□□□□ 0.49
USP4-206ENST00000461553 RTKN2Q8IZC4 609 aa18.12■□□□□ 0.49
USP4-206ENST00000461553 DUSP27Q5VZP5 1158 aa18.11■□□□□ 0.49
USP4-206ENST00000461553 SMC1BQ8NDV3 1235 aa18.11■□□□□ 0.49
USP4-206ENST00000461553 RBM17Q96I25 401 aaKnown RBP18.11■□□□□ 0.49
USP4-206ENST00000461553 DBF4Q9UBU7 674 aaPredicted RBP18.11■□□□□ 0.49
USP4-206ENST00000461553 SNED1Q8TER0 1413 aa18.11■□□□□ 0.49
USP4-206ENST00000461553 ZNF316A6NFI3 1004 aaPredicted RBP18.1■□□□□ 0.49
USP4-206ENST00000461553 OLFM4Q6UX06 510 aa18.1■□□□□ 0.49
USP4-206ENST00000461553 TAF1P21675 1872 aa18.09■□□□□ 0.49
USP4-206ENST00000461553 ZNF853P0CG23 659 aa18.09■□□□□ 0.49
USP4-206ENST00000461553 HOXA10P31260 410 aaPredicted RBP18.09■□□□□ 0.49
USP4-206ENST00000461553 CC2D2BQ6DHV5 1058 aa18.09■□□□□ 0.49
USP4-206ENST00000461553 NLRP3Q96P20 1036 aa18.09■□□□□ 0.49
USP4-206ENST00000461553 ZNF277Q9NRM2 450 aaPredicted RBP18.09■□□□□ 0.49
USP4-206ENST00000461553 PPEF1O14829 653 aaPredicted RBP18.08■□□□□ 0.48
USP4-206ENST00000461553 ANP32CO43423 234 aa18.08■□□□□ 0.48
USP4-206ENST00000461553 TCIRG1Q13488 830 aa18.08■□□□□ 0.48
USP4-206ENST00000461553 NLRP10Q86W26 655 aa18.08■□□□□ 0.48
USP4-206ENST00000461553 PLBD2Q8NHP8 589 aa18.08■□□□□ 0.48
USP4-206ENST00000461553 CRAMP1Q96RY5 1269 aa18.08■□□□□ 0.48
USP4-206ENST00000461553 HYPKQ9NX55 129 aa18.08■□□□□ 0.48
USP4-206ENST00000461553 LRRC37AA6NMS7 1700 aa18.07■□□□□ 0.48
USP4-206ENST00000461553 SH3TC1Q8TE82 1336 aa18.07■□□□□ 0.48
USP4-206ENST00000461553 IARSP41252 1262 aaKnown RBP18.07■□□□□ 0.48
USP4-206ENST00000461553 C3orf67Q6ZVT6 689 aa18.07■□□□□ 0.48
USP4-206ENST00000461553 PSMD1Q99460 953 aa18.07■□□□□ 0.48
USP4-206ENST00000461553 TRMT112Q9UI30 125 aaKnown RBP18.07■□□□□ 0.48
USP4-206ENST00000461553 CACNA1FO60840 1977 aa18.07■□□□□ 0.48
USP4-206ENST00000461553 GRIPAP1Q4V328 841 aa18.06■□□□□ 0.48
USP4-206ENST00000461553 CCDC184Q52MB2 194 aa18.06■□□□□ 0.48
USP4-206ENST00000461553 TMX4Q9H1E5 349 aaPredicted RBP18.06■□□□□ 0.48
USP4-206ENST00000461553 MRS2Q9HD23 443 aa18.06■□□□□ 0.48
USP4-206ENST00000461553 ABCC4O15439 1325 aa18.05■□□□□ 0.48
USP4-206ENST00000461553 DDNO94850 711 aaPredicted RBP18.05■□□□□ 0.48
USP4-206ENST00000461553 GOLGA2Q08379 1002 aa18.05■□□□□ 0.48
USP4-206ENST00000461553 SLC10A5Q5PT55 438 aa18.05■□□□□ 0.48
USP4-206ENST00000461553 ANKRD13DQ6ZTN6 518 aa18.05■□□□□ 0.48
USP4-206ENST00000461553 SYNE4Q8N205 404 aa18.05■□□□□ 0.48
USP4-206ENST00000461553 ZNF541Q9H0D2 1346 aa18.04■□□□□ 0.48
USP4-206ENST00000461553 MYH3P11055 1940 aa18.04■□□□□ 0.48
USP4-206ENST00000461553 IQCA1LA6NCM1 817 aa18.04■□□□□ 0.48
USP4-206ENST00000461553 COL4A5P29400 1685 aa18.03■□□□□ 0.48
USP4-206ENST00000461553 POTECB2RU33 542 aa18.03■□□□□ 0.48
USP4-206ENST00000461553 ELL2O00472 640 aaPredicted RBP18.03■□□□□ 0.48
USP4-206ENST00000461553 TCERG1O14776 1098 aaKnown RBP18.03■□□□□ 0.48
USP4-206ENST00000461553 HCLS1P14317 486 aaPredicted RBP18.03■□□□□ 0.48
USP4-206ENST00000461553 JDP2Q8WYK2 163 aa18.03■□□□□ 0.48
USP4-206ENST00000461553 CHMP4AQ9BY43 222 aa18.03■□□□□ 0.48
USP4-206ENST00000461553 CCDC27Q2M243 656 aa18.02■□□□□ 0.48
USP4-206ENST00000461553 L3MBTL3Q96JM7 780 aaPredicted RBP18.02■□□□□ 0.48
USP4-206ENST00000461553 ISCA1Q9BUE6 129 aa18.02■□□□□ 0.48
USP4-206ENST00000461553 ADAMTSL1Q8N6G6 1762 aa18.02■□□□□ 0.47
USP4-206ENST00000461553 ATP5J2-PTCD1G3V325 749 aa18.01■□□□□ 0.47
USP4-206ENST00000461553 DDX46Q7L014 1031 aaKnown RBP18.01■□□□□ 0.47
USP4-206ENST00000461553 RIC3Q7Z5B4 369 aa18.01■□□□□ 0.47
USP4-206ENST00000461553 ATP6V0A2Q9Y487 856 aa18.01■□□□□ 0.47
USP4-206ENST00000461553 FZD9O00144 591 aa18■□□□□ 0.47
USP4-206ENST00000461553 CCDC30Q5VVM6 783 aa18■□□□□ 0.47
USP4-206ENST00000461553 LARGE2Q8N3Y3 721 aa18■□□□□ 0.47
USP4-206ENST00000461553 C8orf58Q8NAV2 365 aa18■□□□□ 0.47
USP4-206ENST00000461553 TSR2Q969E8 191 aaKnown RBP18■□□□□ 0.47
USP4-206ENST00000461553 ZNF428Q96B54 188 aa18■□□□□ 0.47
USP4-206ENST00000461553 EIF6P56537 245 aaKnown RBP17.99■□□□□ 0.47
USP4-206ENST00000461553 GRAPQ13588 217 aa17.99■□□□□ 0.47
USP4-206ENST00000461553 SLC51AQ86UW1 340 aa17.99■□□□□ 0.47
USP4-206ENST00000461553 WWC1Q8IX03 1113 aa17.99■□□□□ 0.47
USP4-206ENST00000461553 GRAPLQ8TC17 118 aaPredicted RBP17.99■□□□□ 0.47
USP4-206ENST00000461553 PHAXQ9H814 394 aaKnown RBP17.99■□□□□ 0.47
USP4-206ENST00000461553 SPEF2Q9C093 1822 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 PPIP5K2O43314 1243 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 BBOX1O75936 387 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 DDX58O95786 925 aaKnown RBP17.98■□□□□ 0.47
USP4-206ENST00000461553 HTRA3P83110 453 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 CHADLQ6NUI6 762 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 NIM1KQ8IY84 436 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 GPC2Q8N158 579 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 SUPT20HQ8NEM7 779 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 FAM89AQ96GI7 184 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 HACL1Q9UJ83 578 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 DUOX1Q9NRD9 1551 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 LTBP1Q14766 1721 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 IL16Q14005 1332 aa17.98■□□□□ 0.47
USP4-206ENST00000461553 TMC4Q7Z404 712 aa17.97■□□□□ 0.47
USP4-206ENST00000461553 LDHDQ86WU2 507 aa17.97■□□□□ 0.47
USP4-206ENST00000461553 STK31Q9BXU1 1019 aa17.97■□□□□ 0.47
USP4-206ENST00000461553 TAF1DQ9H5J8 278 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms