RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CCZ1P86791 482 aaPredicted RBP13.81□□□□□ -0.2
CPSF3-202ENST00000460593 NYAP1Q6ZVC0 841 aa13.81□□□□□ -0.2
CPSF3-202ENST00000460593 ASXL2Q76L83 1435 aa13.81□□□□□ -0.2
CPSF3-202ENST00000460593 HNRNPH2P55795 449 aaKnown RBP13.81□□□□□ -0.2
CPSF3-202ENST00000460593 CREB3L3Q68CJ9 461 aa13.81□□□□□ -0.2
CPSF3-202ENST00000460593 NEK11Q8NG66 645 aa13.81□□□□□ -0.2
CPSF3-202ENST00000460593 EPC1Q9H2F5 836 aa13.81□□□□□ -0.2
CPSF3-202ENST00000460593 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.81□□□□□ -0.2
CPSF3-202ENST00000460593 IQCB1Q15051 598 aa13.81□□□□□ -0.2
CPSF3-202ENST00000460593 ZFP91Q96JP5 570 aaPredicted RBP13.81□□□□□ -0.2
CPSF3-202ENST00000460593 NOL10Q9BSC4 688 aaKnown RBP13.81□□□□□ -0.2
CPSF3-202ENST00000460593 SYT10Q6XYQ8 523 aa13.8□□□□□ -0.2
CPSF3-202ENST00000460593 TRIM34Q9BYJ4 488 aa13.8□□□□□ -0.2
CPSF3-202ENST00000460593 SH2B1Q9NRF2 756 aaPredicted RBP13.8□□□□□ -0.2
CPSF3-202ENST00000460593 AATKQ6ZMQ8 1374 aa13.8□□□□□ -0.2
CPSF3-202ENST00000460593 SLU7O95391 586 aaKnown RBP13.8□□□□□ -0.2
CPSF3-202ENST00000460593 PTPN21Q16825 1174 aa13.8□□□□□ -0.2
CPSF3-202ENST00000460593 CCDC30Q5VVM6 783 aa13.8□□□□□ -0.2
CPSF3-202ENST00000460593 CCAR2Q8N163 923 aaKnown RBP13.8□□□□□ -0.2
CPSF3-202ENST00000460593 ZSCAN31Q96LW9 406 aaPredicted RBP13.8□□□□□ -0.2
CPSF3-202ENST00000460593 LRRC2Q9BYS8 371 aa13.8□□□□□ -0.2
CPSF3-202ENST00000460593 DDX19AQ9NUU7 478 aaKnown RBP13.8□□□□□ -0.2
CPSF3-202ENST00000460593 SLC52A1Q9NWF4 448 aa13.8□□□□□ -0.2
CPSF3-202ENST00000460593 RIMS1Q86UR5 1692 aaKnown RBP13.8□□□□□ -0.2
CPSF3-202ENST00000460593 KIF1BPQ96EK5 621 aa13.79□□□□□ -0.2
CPSF3-202ENST00000460593 NPHP3Q7Z494 1330 aa13.79□□□□□ -0.2
CPSF3-202ENST00000460593 BECN2A8MW95 431 aa13.79□□□□□ -0.2
CPSF3-202ENST00000460593 CHGBP05060 677 aa13.79□□□□□ -0.2
CPSF3-202ENST00000460593 NECTIN1Q15223 517 aa13.79□□□□□ -0.2
CPSF3-202ENST00000460593 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.79□□□□□ -0.2
CPSF3-202ENST00000460593 ERO1AQ96HE7 468 aa13.79□□□□□ -0.2
CPSF3-202ENST00000460593 CLTCQ00610 1675 aaKnown RBP13.79□□□□□ -0.2
CPSF3-202ENST00000460593 SEC31AO94979 1220 aaKnown RBP13.79□□□□□ -0.2
CPSF3-202ENST00000460593 CLCN6P51797 869 aa13.79□□□□□ -0.2
CPSF3-202ENST00000460593 NMIQ13287 307 aaPredicted RBP13.79□□□□□ -0.2
CPSF3-202ENST00000460593 ZCCHC17Q9NP64 241 aaKnown RBP13.79□□□□□ -0.2
CPSF3-202ENST00000460593 ALKQ9UM73 1620 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 AOX1Q06278 1338 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 ZKSCAN1P17029 563 aaPredicted RBP13.78□□□□□ -0.2
CPSF3-202ENST00000460593 AOPEPQ8N6M6 819 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 BRF1Q92994 677 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 SCAND2PQ9GZW5 306 aaPredicted RBP13.78□□□□□ -0.2
CPSF3-202ENST00000460593 GOLPH3LQ9H4A5 285 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 PREX1Q8TCU6 1659 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 CCDC171Q6TFL3 1326 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 PRR36Q9H6K5 1346 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 SLC27A2O14975 620 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 FMNL2Q96PY5 1086 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 FAM53CQ9NYF3 392 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 FHOD1Q9Y613 1164 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 CCDC61Q9Y6R9 512 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 ELP1O95163 1332 aa13.78□□□□□ -0.2
CPSF3-202ENST00000460593 TAF7Q15545 349 aaPredicted RBP13.77□□□□□ -0.2
CPSF3-202ENST00000460593 EDC3Q96F86 508 aaKnown RBP13.77□□□□□ -0.2
CPSF3-202ENST00000460593 TMX1Q9H3N1 280 aa13.77□□□□□ -0.2
CPSF3-202ENST00000460593 TOB2Q14106 344 aaPredicted RBP13.77□□□□□ -0.21
CPSF3-202ENST00000460593 ARHGAP29Q52LW3 1261 aa13.77□□□□□ -0.21
CPSF3-202ENST00000460593 HDGFL1Q5TGJ6 251 aa13.77□□□□□ -0.21
CPSF3-202ENST00000460593 RBM43Q6ZSC3 357 aaKnown RBP13.77□□□□□ -0.21
CPSF3-202ENST00000460593 CCDC8Q9H0W5 538 aaPredicted RBP13.77□□□□□ -0.21
CPSF3-202ENST00000460593 PPP6R1Q9UPN7 881 aa13.77□□□□□ -0.21
CPSF3-202ENST00000460593 A0A0D9SFI3 127 aa13.77□□□□□ -0.21
CPSF3-202ENST00000460593 PLA2G4AP47712 749 aa13.77□□□□□ -0.21
CPSF3-202ENST00000460593 IPO4Q8TEX9 1081 aaKnown RBP13.77□□□□□ -0.21
CPSF3-202ENST00000460593 LTV1Q96GA3 475 aaPredicted RBP13.77□□□□□ -0.21
CPSF3-202ENST00000460593 NDUFB9Q9Y6M9 179 aa13.77□□□□□ -0.21
CPSF3-202ENST00000460593 GUCY1B3Q02153 619 aa13.76□□□□□ -0.21
CPSF3-202ENST00000460593 SNW1Q13573 536 aaKnown RBP13.76□□□□□ -0.21
CPSF3-202ENST00000460593 POLA2Q14181 598 aa13.76□□□□□ -0.21
CPSF3-202ENST00000460593 BLOC1S2Q6QNY1 142 aa13.76□□□□□ -0.21
CPSF3-202ENST00000460593 DHX40Q8IX18 779 aaKnown RBP13.76□□□□□ -0.21
CPSF3-202ENST00000460593 GYS2P54840 703 aa13.76□□□□□ -0.21
CPSF3-202ENST00000460593 ST5P78524 1137 aa13.76□□□□□ -0.21
CPSF3-202ENST00000460593 E4F1Q66K89 784 aaPredicted RBP13.76□□□□□ -0.21
CPSF3-202ENST00000460593 CCAR1Q8IX12 1150 aaKnown RBP13.76□□□□□ -0.21
CPSF3-202ENST00000460593 TLR7Q9NYK1 1049 aaKnown RBP13.76□□□□□ -0.21
CPSF3-202ENST00000460593 GLRX3O76003 335 aaKnown RBP13.75□□□□□ -0.21
CPSF3-202ENST00000460593 GOLGA8FQ08AF8 430 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 GOLGA8DPQ0D2H9 430 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 RUFY2Q8WXA3 655 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 BOLA2Q9H3K6 86 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 CALCOCO1Q9P1Z2 691 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 TAOK2Q9UL54 1235 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 H3BQV1 296 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 PNMA6AP0CW24 399 aaPredicted RBP13.75□□□□□ -0.21
CPSF3-202ENST00000460593 CYP2C19P33261 490 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 IFFO2Q5TF58 517 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 ZNF589Q86UQ0 364 aaPredicted RBP13.75□□□□□ -0.21
CPSF3-202ENST00000460593 AACSQ86V21 672 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 FAM177A1Q8N128 213 aaPredicted RBP13.75□□□□□ -0.21
CPSF3-202ENST00000460593 ADCY9O60503 1353 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 PI4KAP2A4QPH2 592 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 ISM2Q6H9L7 571 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 PI4KAP1Q8N8J0 262 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 EYA1Q99502 592 aa13.75□□□□□ -0.21
CPSF3-202ENST00000460593 BIN1O00499 593 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 SMC2O95347 1197 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 HSP90B1P14625 803 aaKnown RBP13.74□□□□□ -0.21
CPSF3-202ENST00000460593 TMC6Q7Z403 805 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 NBPF11Q86T75 865 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms