RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TCIRG1Q13488 830 aa24.05■■□□□ 1.44
USP39-209ENST00000458268 STYK1Q6J9G0 422 aa24.05■■□□□ 1.44
USP39-209ENST00000458268 SPINK5Q9NQ38 1064 aaPredicted RBP24.05■■□□□ 1.44
USP39-209ENST00000458268 CCDC88AQ3V6T2 1871 aa24.04■■□□□ 1.44
USP39-209ENST00000458268 NPR1P16066 1061 aa24.04■■□□□ 1.44
USP39-209ENST00000458268 C9orf131Q5VYM1 1079 aa24.04■■□□□ 1.44
USP39-209ENST00000458268 PRPF40BQ6NWY9 871 aaKnown RBP24.04■■□□□ 1.44
USP39-209ENST00000458268 NLRP10Q86W26 655 aa24.04■■□□□ 1.44
USP39-209ENST00000458268 RPGRQ92834 1020 aaKnown RBP24.04■■□□□ 1.44
USP39-209ENST00000458268 MYH16Q9H6N6 1097 aa24.04■■□□□ 1.44
USP39-209ENST00000458268 RNF181Q9P0P0 153 aa24.04■■□□□ 1.44
USP39-209ENST00000458268 TRMT112Q9UI30 125 aaKnown RBP24.04■■□□□ 1.44
USP39-209ENST00000458268 RTL5Q5HYW3 569 aaPredicted RBP24.03■■□□□ 1.44
USP39-209ENST00000458268 CHMP4AQ9BY43 222 aa24.03■■□□□ 1.44
USP39-209ENST00000458268 IBTKQ9P2D0 1353 aaPredicted RBP24.03■■□□□ 1.44
USP39-209ENST00000458268 MIER1Q8N108 512 aa24.02■■□□□ 1.44
USP39-209ENST00000458268 MYD88Q99836 296 aa24.02■■□□□ 1.44
USP39-209ENST00000458268 SBF1O95248 1867 aa24.02■■□□□ 1.44
USP39-209ENST00000458268 SYNE4Q8N205 404 aa24.01■■□□□ 1.43
USP39-209ENST00000458268 DDX58O95786 925 aaKnown RBP24■■□□□ 1.43
USP39-209ENST00000458268 HCLS1P14317 486 aaPredicted RBP24■■□□□ 1.43
USP39-209ENST00000458268 LAMB2P55268 1798 aa23.99■■□□□ 1.43
USP39-209ENST00000458268 SLC4A2P04920 1241 aa23.99■■□□□ 1.43
USP39-209ENST00000458268 C3orf67Q6ZVT6 689 aa23.99■■□□□ 1.43
USP39-209ENST00000458268 G2E3Q7L622 706 aa23.98■■□□□ 1.43
USP39-209ENST00000458268 NLRP3Q96P20 1036 aa23.98■■□□□ 1.43
USP39-209ENST00000458268 GPBP1L1Q9HC44 474 aaPredicted RBP23.98■■□□□ 1.43
USP39-209ENST00000458268 ADCY9O60503 1353 aa23.98■■□□□ 1.43
USP39-209ENST00000458268 OLFM4Q6UX06 510 aa23.97■■□□□ 1.43
USP39-209ENST00000458268 SH3TC1Q8TE82 1336 aa23.97■■□□□ 1.43
USP39-209ENST00000458268 MAP3K2Q9Y2U5 619 aa23.97■■□□□ 1.43
USP39-209ENST00000458268 FER1L6Q2WGJ9 1857 aa23.96■■□□□ 1.43
USP39-209ENST00000458268 KLRG2A4D1S0 409 aaPredicted RBP23.96■■□□□ 1.43
USP39-209ENST00000458268 NFKBIEO00221 500 aa23.96■■□□□ 1.43
USP39-209ENST00000458268 ALDH1B1P30837 517 aa23.96■■□□□ 1.43
USP39-209ENST00000458268 FAM89AQ96GI7 184 aa23.96■■□□□ 1.43
USP39-209ENST00000458268 RBM17Q96I25 401 aaKnown RBP23.96■■□□□ 1.43
USP39-209ENST00000458268 ISCA1Q9BUE6 129 aa23.96■■□□□ 1.43
USP39-209ENST00000458268 TIAM2Q8IVF5 1701 aa23.96■■□□□ 1.43
USP39-209ENST00000458268 RIC1Q4ADV7 1423 aa23.94■■□□□ 1.42
USP39-209ENST00000458268 DDX60Q8IY21 1712 aaKnown RBP23.94■■□□□ 1.42
USP39-209ENST00000458268 PI4KAP2A4QPH2 592 aa23.94■■□□□ 1.42
USP39-209ENST00000458268 VAMP4O75379 141 aa23.94■■□□□ 1.42
USP39-209ENST00000458268 CRY2Q49AN0 593 aa23.94■■□□□ 1.42
USP39-209ENST00000458268 PI4KAP1Q8N8J0 262 aa23.94■■□□□ 1.42
USP39-209ENST00000458268 JARID2Q92833 1246 aaPredicted RBP23.94■■□□□ 1.42
USP39-209ENST00000458268 TAOK3Q9H2K8 898 aa23.94■■□□□ 1.42
USP39-209ENST00000458268 RNF123Q5XPI4 1314 aa23.93■■□□□ 1.42
USP39-209ENST00000458268 ZNF521Q96K83 1311 aa23.93■■□□□ 1.42
USP39-209ENST00000458268 LMNB1P20700 586 aa23.93■■□□□ 1.42
USP39-209ENST00000458268 FKBP5Q13451 457 aaPredicted RBP23.93■■□□□ 1.42
USP39-209ENST00000458268 CCDC93Q567U6 631 aa23.93■■□□□ 1.42
USP39-209ENST00000458268 SOGA3Q5TF21 947 aa23.93■■□□□ 1.42
USP39-209ENST00000458268 CACNA1FO60840 1977 aa23.92■■□□□ 1.42
USP39-209ENST00000458268 PRELPP51888 382 aa23.92■■□□□ 1.42
USP39-209ENST00000458268 KSR2Q6VAB6 950 aa23.92■■□□□ 1.42
USP39-209ENST00000458268 METTL22Q9BUU2 404 aaPredicted RBP23.92■■□□□ 1.42
USP39-209ENST00000458268 TAF1P21675 1872 aa23.92■■□□□ 1.42
USP39-209ENST00000458268 PPEF1O14829 653 aaPredicted RBP23.91■■□□□ 1.42
USP39-209ENST00000458268 NEXNQ0ZGT2 675 aa23.91■■□□□ 1.42
USP39-209ENST00000458268 FLIIQ13045 1269 aa23.91■■□□□ 1.42
USP39-209ENST00000458268 SLC10A5Q5PT55 438 aa23.9■■□□□ 1.42
USP39-209ENST00000458268 SLC51AQ86UW1 340 aa23.9■■□□□ 1.42
USP39-209ENST00000458268 CWC25Q9NXE8 425 aaPredicted RBP23.9■■□□□ 1.42
USP39-209ENST00000458268 E9PSI1 815 aa23.89■■□□□ 1.41
USP39-209ENST00000458268 IRS4O14654 1257 aaPredicted RBP23.89■■□□□ 1.41
USP39-209ENST00000458268 CDCA7LQ96GN5 454 aa23.89■■□□□ 1.41
USP39-209ENST00000458268 ABCC4O15439 1325 aa23.88■■□□□ 1.41
USP39-209ENST00000458268 DDX46Q7L014 1031 aaKnown RBP23.88■■□□□ 1.41
USP39-209ENST00000458268 CRAMP1Q96RY5 1269 aa23.88■■□□□ 1.41
USP39-209ENST00000458268 DICER1Q9UPY3 1922 aaKnown RBP23.87■■□□□ 1.41
USP39-209ENST00000458268 HOXA10P31260 410 aaPredicted RBP23.87■■□□□ 1.41
USP39-209ENST00000458268 CWF19L2Q2TBE0 894 aaKnown RBP23.87■■□□□ 1.41
USP39-209ENST00000458268 CCDC191Q8NCU4 936 aa23.87■■□□□ 1.41
USP39-209ENST00000458268 C7orf43Q8WVR3 580 aa23.87■■□□□ 1.41
USP39-209ENST00000458268 TMX4Q9H1E5 349 aaPredicted RBP23.87■■□□□ 1.41
USP39-209ENST00000458268 ZNF277Q9NRM2 450 aaPredicted RBP23.87■■□□□ 1.41
USP39-209ENST00000458268 TRIM28Q13263 835 aaKnown RBP23.86■■□□□ 1.41
USP39-209ENST00000458268 CCDC85AQ96PX6 553 aaPredicted RBP23.86■■□□□ 1.41
USP39-209ENST00000458268 FKBP4Q02790 459 aaKnown RBP eCLIP23.85■■□□□ 1.41
USP39-209ENST00000458268 SLFN5Q08AF3 891 aa23.85■■□□□ 1.41
USP39-209ENST00000458268 RTKN2Q8IZC4 609 aa23.85■■□□□ 1.41
USP39-209ENST00000458268 ZBTB38Q8NAP3 1195 aaPredicted RBP23.85■■□□□ 1.41
USP39-209ENST00000458268 NMRK2Q9NPI5 230 aa23.85■■□□□ 1.41
USP39-209ENST00000458268 F6X3S4 739 aa23.84■■□□□ 1.41
USP39-209ENST00000458268 IGKV5-2P06315 115 aa23.84■■□□□ 1.41
USP39-209ENST00000458268 DNAAF4Q8WXU2 420 aa23.84■■□□□ 1.41
USP39-209ENST00000458268 KDM2BQ8NHM5 1336 aa23.84■■□□□ 1.41
USP39-209ENST00000458268 PCCAP05165 728 aaPredicted RBP23.83■■□□□ 1.41
USP39-209ENST00000458268 LTBP3Q9NS15 1303 aa23.83■■□□□ 1.4
USP39-209ENST00000458268 BCL2L13Q9BXK5 485 aa23.82■■□□□ 1.4
USP39-209ENST00000458268 NEURL1BA8MQ27 555 aa23.81■■□□□ 1.4
USP39-209ENST00000458268 HNRNPUQ00839 825 aaKnown RBP eCLIP23.81■■□□□ 1.4
USP39-209ENST00000458268 GRAPQ13588 217 aa23.81■■□□□ 1.4
USP39-209ENST00000458268 GRAPLQ8TC17 118 aaPredicted RBP23.81■■□□□ 1.4
USP39-209ENST00000458268 SLC4A10Q6U841 1118 aa23.8■■□□□ 1.4
USP39-209ENST00000458268 UBE3BQ7Z3V4 1068 aa23.8■■□□□ 1.4
USP39-209ENST00000458268 RRAGCQ9HB90 399 aa23.8■■□□□ 1.4
USP39-209ENST00000458268 MYH3P11055 1940 aa23.79■■□□□ 1.4
USP39-209ENST00000458268 HSP90B1P14625 803 aaKnown RBP23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms