RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 UTP14AQ9BVJ6 771 aaKnown RBP27.5■■□□□ 1.99
HMGB3-205ENST00000455596 TAOK3Q9H2K8 898 aa27.5■■□□□ 1.99
HMGB3-205ENST00000455596 NMRK2Q9NPI5 230 aa27.5■■□□□ 1.99
HMGB3-205ENST00000455596 SENP3-EIF4A1A0A087X0R7 540 aa27.49■■□□□ 1.99
HMGB3-205ENST00000455596 TCIRG1Q13488 830 aa27.49■■□□□ 1.99
HMGB3-205ENST00000455596 CCDC93Q567U6 631 aa27.49■■□□□ 1.99
HMGB3-205ENST00000455596 PLBD2Q8NHP8 589 aa27.49■■□□□ 1.99
HMGB3-205ENST00000455596 C7orf43Q8WVR3 580 aa27.49■■□□□ 1.99
HMGB3-205ENST00000455596 ELL2O00472 640 aaPredicted RBP27.48■■□□□ 1.99
HMGB3-205ENST00000455596 WWC1Q8IX03 1113 aa27.48■■□□□ 1.99
HMGB3-205ENST00000455596 RPGRQ92834 1020 aaKnown RBP27.48■■□□□ 1.99
HMGB3-205ENST00000455596 RNF123Q5XPI4 1314 aa27.47■■□□□ 1.99
HMGB3-205ENST00000455596 NCBP3Q53F19 620 aaKnown RBP27.47■■□□□ 1.99
HMGB3-205ENST00000455596 ANKRD13DQ6ZTN6 518 aa27.47■■□□□ 1.99
HMGB3-205ENST00000455596 NLRP10Q86W26 655 aa27.46■■□□□ 1.99
HMGB3-205ENST00000455596 C8orf58Q8NAV2 365 aa27.46■■□□□ 1.99
HMGB3-205ENST00000455596 NLRP3Q96P20 1036 aa27.45■■□□□ 1.98
HMGB3-205ENST00000455596 CHMP4AQ9BY43 222 aa27.45■■□□□ 1.98
HMGB3-205ENST00000455596 HOXA10P31260 410 aaPredicted RBP27.44■■□□□ 1.98
HMGB3-205ENST00000455596 SLC10A5Q5PT55 438 aa27.44■■□□□ 1.98
HMGB3-205ENST00000455596 RBM17Q96I25 401 aaKnown RBP27.44■■□□□ 1.98
HMGB3-205ENST00000455596 DDX60Q8IY21 1712 aaKnown RBP27.44■■□□□ 1.98
HMGB3-205ENST00000455596 GLTPD2A6NH11 291 aa27.43■■□□□ 1.98
HMGB3-205ENST00000455596 TOMM70O94826 608 aa27.43■■□□□ 1.98
HMGB3-205ENST00000455596 TSR2Q969E8 191 aaKnown RBP27.43■■□□□ 1.98
HMGB3-205ENST00000455596 FKBP4Q02790 459 aaKnown RBP eCLIP27.42■■□□□ 1.98
HMGB3-205ENST00000455596 C16orf71Q8IYS4 520 aaPredicted RBP27.42■■□□□ 1.98
HMGB3-205ENST00000455596 RTKN2Q8IZC4 609 aa27.42■■□□□ 1.98
HMGB3-205ENST00000455596 RRAGCQ9HB90 399 aa27.42■■□□□ 1.98
HMGB3-205ENST00000455596 TRMT112Q9UI30 125 aaKnown RBP27.42■■□□□ 1.98
HMGB3-205ENST00000455596 IL16Q14005 1332 aa27.41■■□□□ 1.98
HMGB3-205ENST00000455596 CCDC30Q5VVM6 783 aa27.41■■□□□ 1.98
HMGB3-205ENST00000455596 CRAMP1Q96RY5 1269 aa27.41■■□□□ 1.98
HMGB3-205ENST00000455596 WDR90Q96KV7 1748 aa27.41■■□□□ 1.98
HMGB3-205ENST00000455596 SH3TC1Q8TE82 1336 aa27.41■■□□□ 1.98
HMGB3-205ENST00000455596 GOLGA2Q08379 1002 aa27.4■■□□□ 1.98
HMGB3-205ENST00000455596 DPY19L2Q6NUT2 758 aa27.4■■□□□ 1.98
HMGB3-205ENST00000455596 OLFM4Q6UX06 510 aa27.4■■□□□ 1.98
HMGB3-205ENST00000455596 C3orf67Q6ZVT6 689 aa27.4■■□□□ 1.98
HMGB3-205ENST00000455596 TSPYL6Q8N831 410 aa27.4■■□□□ 1.98
HMGB3-205ENST00000455596 PHAXQ9H814 394 aaKnown RBP27.4■■□□□ 1.98
HMGB3-205ENST00000455596 CACNA1FO60840 1977 aa27.4■■□□□ 1.98
HMGB3-205ENST00000455596 RIC3Q7Z5B4 369 aa27.39■■□□□ 1.98
HMGB3-205ENST00000455596 FAM9BQ8IZU0 186 aa27.39■■□□□ 1.98
HMGB3-205ENST00000455596 ISCA1Q9BUE6 129 aa27.39■■□□□ 1.98
HMGB3-205ENST00000455596 CC2D2BQ6DHV5 1058 aa27.38■■□□□ 1.97
HMGB3-205ENST00000455596 SALL2Q9Y467 1007 aaPredicted RBP27.38■■□□□ 1.97
HMGB3-205ENST00000455596 TAF1P21675 1872 aa27.38■■□□□ 1.97
HMGB3-205ENST00000455596 ATP5J2-PTCD1G3V325 749 aa27.37■■□□□ 1.97
HMGB3-205ENST00000455596 SYNE4Q8N205 404 aa27.37■■□□□ 1.97
HMGB3-205ENST00000455596 SNED1Q8TER0 1413 aa27.36■■□□□ 1.97
HMGB3-205ENST00000455596 PPEF1O14829 653 aaPredicted RBP27.36■■□□□ 1.97
HMGB3-205ENST00000455596 HCLS1P14317 486 aaPredicted RBP27.36■■□□□ 1.97
HMGB3-205ENST00000455596 WDR63Q8IWG1 891 aa27.36■■□□□ 1.97
HMGB3-205ENST00000455596 HSPA6P17066 643 aa27.35■■□□□ 1.97
HMGB3-205ENST00000455596 TWISTNBQ3B726 338 aaPredicted RBP27.35■■□□□ 1.97
HMGB3-205ENST00000455596 RBM46Q8TBY0 533 aaKnown RBP27.35■■□□□ 1.97
HMGB3-205ENST00000455596 ZNF277Q9NRM2 450 aaPredicted RBP27.35■■□□□ 1.97
HMGB3-205ENST00000455596 VEGFAP15692 232 aaPredicted RBP27.34■■□□□ 1.97
HMGB3-205ENST00000455596 TRIM28Q13263 835 aaKnown RBP27.34■■□□□ 1.97
HMGB3-205ENST00000455596 GRIPAP1Q4V328 841 aa27.34■■□□□ 1.97
HMGB3-205ENST00000455596 ZNF428Q96B54 188 aa27.34■■□□□ 1.97
HMGB3-205ENST00000455596 PSMD1Q99460 953 aa27.34■■□□□ 1.97
HMGB3-205ENST00000455596 DDX58O95786 925 aaKnown RBP27.33■■□□□ 1.97
HMGB3-205ENST00000455596 STK31Q9BXU1 1019 aa27.33■■□□□ 1.97
HMGB3-205ENST00000455596 ABCC4O15439 1325 aa27.33■■□□□ 1.97
HMGB3-205ENST00000455596 IARSP41252 1262 aaKnown RBP27.32■■□□□ 1.96
HMGB3-205ENST00000455596 TMX4Q9H1E5 349 aaPredicted RBP27.32■■□□□ 1.96
HMGB3-205ENST00000455596 FANCIQ9NVI1 1328 aa27.32■■□□□ 1.96
HMGB3-205ENST00000455596 TCERG1O14776 1098 aaKnown RBP27.31■■□□□ 1.96
HMGB3-205ENST00000455596 FAM89AQ96GI7 184 aa27.31■■□□□ 1.96
HMGB3-205ENST00000455596 SCN4AP35499 1836 aa27.31■■□□□ 1.96
HMGB3-205ENST00000455596 DDX46Q7L014 1031 aaKnown RBP27.3■■□□□ 1.96
HMGB3-205ENST00000455596 MYD88Q99836 296 aa27.3■■□□□ 1.96
HMGB3-205ENST00000455596 ATP6V0A2Q9Y487 856 aa27.29■■□□□ 1.96
HMGB3-205ENST00000455596 BBOX1O75936 387 aa27.28■■□□□ 1.96
HMGB3-205ENST00000455596 DDNO94850 711 aaPredicted RBP27.28■■□□□ 1.96
HMGB3-205ENST00000455596 FSTL1Q12841 308 aa27.28■■□□□ 1.96
HMGB3-205ENST00000455596 METTL22Q9BUU2 404 aaPredicted RBP27.28■■□□□ 1.96
HMGB3-205ENST00000455596 POTECB2RU33 542 aa27.27■■□□□ 1.96
HMGB3-205ENST00000455596 RTL5Q5HYW3 569 aaPredicted RBP27.27■■□□□ 1.96
HMGB3-205ENST00000455596 CCDC191Q8NCU4 936 aa27.27■■□□□ 1.96
HMGB3-205ENST00000455596 LRRC37AA6NMS7 1700 aa27.27■■□□□ 1.96
HMGB3-205ENST00000455596 GRAPQ13588 217 aa27.26■■□□□ 1.95
HMGB3-205ENST00000455596 ZBTB38Q8NAP3 1195 aaPredicted RBP27.26■■□□□ 1.95
HMGB3-205ENST00000455596 GRAPLQ8TC17 118 aaPredicted RBP27.26■■□□□ 1.95
HMGB3-205ENST00000455596 MAP3K2Q9Y2U5 619 aa27.26■■□□□ 1.95
HMGB3-205ENST00000455596 MYH3P11055 1940 aa27.26■■□□□ 1.95
HMGB3-205ENST00000455596 IRS4O14654 1257 aaPredicted RBP27.25■■□□□ 1.95
HMGB3-205ENST00000455596 SF3B3Q15393 1217 aaKnown RBP27.25■■□□□ 1.95
HMGB3-205ENST00000455596 KSR2Q6VAB6 950 aa27.25■■□□□ 1.95
HMGB3-205ENST00000455596 SLC51AQ86UW1 340 aa27.25■■□□□ 1.95
HMGB3-205ENST00000455596 SP8Q8IXZ3 490 aa27.25■■□□□ 1.95
HMGB3-205ENST00000455596 SMC1BQ8NDV3 1235 aa27.25■■□□□ 1.95
HMGB3-205ENST00000455596 JDP2Q8WYK2 163 aa27.25■■□□□ 1.95
HMGB3-205ENST00000455596 SLC4A2P04920 1241 aa27.24■■□□□ 1.95
HMGB3-205ENST00000455596 CWC25Q9NXE8 425 aaPredicted RBP27.24■■□□□ 1.95
HMGB3-205ENST00000455596 ZNF541Q9H0D2 1346 aa27.23■■□□□ 1.95
HMGB3-205ENST00000455596 PI4KAP2A4QPH2 592 aa27.23■■□□□ 1.95
HMGB3-205ENST00000455596 FZD9O00144 591 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms