RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 B4GALNT3Q6L9W6 998 aa13.88□□□□□ -0.19
SCN9A-205ENST00000454569 GIGYF2Q6Y7W6 1299 aaKnown RBP13.88□□□□□ -0.19
SCN9A-205ENST00000454569 KIF6Q6ZMV9 814 aa13.88□□□□□ -0.19
SCN9A-205ENST00000454569 LINS1Q8NG48 757 aa13.88□□□□□ -0.19
SCN9A-205ENST00000454569 AK7Q96M32 723 aa13.88□□□□□ -0.19
SCN9A-205ENST00000454569 TCIRG1Q13488 830 aa13.87□□□□□ -0.19
SCN9A-205ENST00000454569 ISCA1Q9BUE6 129 aa13.87□□□□□ -0.19
SCN9A-205ENST00000454569 RTCBQ9Y3I0 505 aaKnown RBP13.87□□□□□ -0.19
SCN9A-205ENST00000454569 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.86□□□□□ -0.19
SCN9A-205ENST00000454569 GPTP24298 496 aa13.86□□□□□ -0.19
SCN9A-205ENST00000454569 USPL1Q5W0Q7 1092 aa13.86□□□□□ -0.19
SCN9A-205ENST00000454569 UPF1Q92900 1129 aaKnown RBP eCLIP13.86□□□□□ -0.19
SCN9A-205ENST00000454569 CASZ1Q86V15 1759 aa13.86□□□□□ -0.19
SCN9A-205ENST00000454569 ERVV-1B6SEH8 477 aa13.85□□□□□ -0.19
SCN9A-205ENST00000454569 GCKRQ14397 625 aa13.85□□□□□ -0.19
SCN9A-205ENST00000454569 SYNE4Q8N205 404 aa13.85□□□□□ -0.19
SCN9A-205ENST00000454569 PPP4R2Q9NY27 417 aa13.85□□□□□ -0.19
SCN9A-205ENST00000454569 CIZ1Q9ULV3 898 aaPredicted RBP13.85□□□□□ -0.19
SCN9A-205ENST00000454569 UBN2Q6ZU65 1347 aa13.85□□□□□ -0.19
SCN9A-205ENST00000454569 ALDH1L1O75891 902 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 IGHDP01880 384 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 BAG6P46379 1132 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 SF3B2Q13435 895 aaKnown RBP13.84□□□□□ -0.19
SCN9A-205ENST00000454569 RTL5Q5HYW3 569 aaPredicted RBP13.84□□□□□ -0.19
SCN9A-205ENST00000454569 TRAPPC3LQ5T215 181 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 ERICH6BQ5W0A0 696 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 SIRT2Q8IXJ6 389 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 ZNF34Q8IZ26 560 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 KAZALD1Q96I82 304 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 NARFQ9UHQ1 456 aa13.84□□□□□ -0.19
SCN9A-205ENST00000454569 CASP7P55210 303 aa13.83□□□□□ -0.19
SCN9A-205ENST00000454569 NEXNQ0ZGT2 675 aa13.83□□□□□ -0.19
SCN9A-205ENST00000454569 COL23A1Q86Y22 540 aaPredicted RBP13.83□□□□□ -0.19
SCN9A-205ENST00000454569 QSER1Q2KHR3 1735 aa13.83□□□□□ -0.2
SCN9A-205ENST00000454569 USP42Q9H9J4 1324 aaKnown RBP13.83□□□□□ -0.2
SCN9A-205ENST00000454569 A0A087WZG4 1122 aa13.83□□□□□ -0.2
SCN9A-205ENST00000454569 EPHA10Q5JZY3 1008 aa13.83□□□□□ -0.2
SCN9A-205ENST00000454569 TBC1D9BQ66K14 1250 aa13.83□□□□□ -0.2
SCN9A-205ENST00000454569 NPM2Q86SE8 214 aaKnown RBP13.83□□□□□ -0.2
SCN9A-205ENST00000454569 NLRP10Q86W26 655 aa13.83□□□□□ -0.2
SCN9A-205ENST00000454569 PDGFDQ9GZP0 370 aaPredicted RBP13.83□□□□□ -0.2
SCN9A-205ENST00000454569 TFCP2L1Q9NZI6 479 aa13.83□□□□□ -0.2
SCN9A-205ENST00000454569 LRRFIP2Q9Y608 721 aaKnown RBP13.83□□□□□ -0.2
SCN9A-205ENST00000454569 UTYO14607 1347 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 PNPLA7Q6ZV29 1317 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 FAM177BA6PVY3 158 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 H7C1W4 665 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 GRM8O00222 908 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 TRIM28Q13263 835 aaKnown RBP13.82□□□□□ -0.2
SCN9A-205ENST00000454569 SUSD4Q5VX71 490 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 SUCLG2Q96I99 432 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 MYH3P11055 1940 aa13.82□□□□□ -0.2
SCN9A-205ENST00000454569 DDX60Q8IY21 1712 aaKnown RBP13.82□□□□□ -0.2
SCN9A-205ENST00000454569 SSFA2P28290 1259 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 RFC4P35249 363 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 SLC15A2Q16348 729 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 BICDL1Q6ZP65 573 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 UBE3BQ7Z3V4 1068 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 CCDC125Q86Z20 511 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 CWC25Q9NXE8 425 aaPredicted RBP13.81□□□□□ -0.2
SCN9A-205ENST00000454569 C9orf78Q9NZ63 289 aaPredicted RBP13.81□□□□□ -0.2
SCN9A-205ENST00000454569 COL24A1Q17RW2 1714 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 TAF1P21675 1872 aa13.81□□□□□ -0.2
SCN9A-205ENST00000454569 UBTFL1P0CB47 393 aaPredicted RBP13.8□□□□□ -0.2
SCN9A-205ENST00000454569 GYS1P13807 737 aa13.8□□□□□ -0.2
SCN9A-205ENST00000454569 CCDC191Q8NCU4 936 aa13.8□□□□□ -0.2
SCN9A-205ENST00000454569 FAM89AQ96GI7 184 aa13.8□□□□□ -0.2
SCN9A-205ENST00000454569 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.8□□□□□ -0.2
SCN9A-205ENST00000454569 NIP7Q9Y221 180 aaKnown RBP eCLIP13.8□□□□□ -0.2
SCN9A-205ENST00000454569 ZPR1O75312 459 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 CEP85Q6P2H3 762 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 SPDYE1Q8NFV5 336 aaPredicted RBP13.79□□□□□ -0.2
SCN9A-205ENST00000454569 CCDC136Q96JN2 1154 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 LAMB2P55268 1798 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 PNMA6EA0A0J9YXQ4 647 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 GNAI2P04899 355 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 GNAI3P08754 354 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 CLEC4GQ6UXB4 293 aa13.79□□□□□ -0.2
SCN9A-205ENST00000454569 IBTKQ9P2D0 1353 aaPredicted RBP13.78□□□□□ -0.2
SCN9A-205ENST00000454569 HSP90AB3PQ58FF7 597 aa13.78□□□□□ -0.2
SCN9A-205ENST00000454569 SKAP1Q86WV1 359 aa13.78□□□□□ -0.2
SCN9A-205ENST00000454569 CCDC24Q8N4L8 307 aa13.78□□□□□ -0.2
SCN9A-205ENST00000454569 ANKRD44Q8N8A2 993 aa13.78□□□□□ -0.2
SCN9A-205ENST00000454569 BICC1Q9H694 974 aaKnown RBP13.78□□□□□ -0.2
SCN9A-205ENST00000454569 KDM2BQ8NHM5 1336 aa13.77□□□□□ -0.2
SCN9A-205ENST00000454569 NTSR2O95665 410 aa13.77□□□□□ -0.21
SCN9A-205ENST00000454569 PCCAP05165 728 aaPredicted RBP13.77□□□□□ -0.21
SCN9A-205ENST00000454569 FOXO4P98177 505 aa13.77□□□□□ -0.21
SCN9A-205ENST00000454569 NFIXQ14938 502 aa13.77□□□□□ -0.21
SCN9A-205ENST00000454569 NUTM1Q86Y26 1132 aa13.77□□□□□ -0.21
SCN9A-205ENST00000454569 STK32BQ9NY57 414 aa13.77□□□□□ -0.21
SCN9A-205ENST00000454569 TM4SF1P30408 202 aa13.76□□□□□ -0.21
SCN9A-205ENST00000454569 ATP8B2P98198 1209 aa13.76□□□□□ -0.21
SCN9A-205ENST00000454569 AAMPQ13685 434 aa13.76□□□□□ -0.21
SCN9A-205ENST00000454569 ZBTB38Q8NAP3 1195 aaPredicted RBP13.76□□□□□ -0.21
SCN9A-205ENST00000454569 TRMT112Q9UI30 125 aaKnown RBP13.76□□□□□ -0.21
SCN9A-205ENST00000454569 ZNF652Q9Y2D9 606 aa13.76□□□□□ -0.21
SCN9A-205ENST00000454569 COL4A1P02462 1669 aa13.76□□□□□ -0.21
SCN9A-205ENST00000454569 NUBP1P53384 320 aa13.75□□□□□ -0.21
SCN9A-205ENST00000454569 MSL1Q68DK7 614 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms