RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 ERFEQ4G0M1 354 aa35.74■■■■□ 3.31
SMARCC1-203ENST00000454240 GOLGB1Q14789 3259 aaKnown RBP35.73■■■■□ 3.31
SMARCC1-203ENST00000454240 PDZRN3Q9UPQ7 1066 aa35.73■■■■□ 3.31
SMARCC1-203ENST00000454240 RNF123Q5XPI4 1314 aa35.73■■■■□ 3.31
SMARCC1-203ENST00000454240 COL11A2P13942 1736 aaPredicted RBP35.72■■■■□ 3.31
SMARCC1-203ENST00000454240 ABCC12Q96J65 1359 aa35.72■■■■□ 3.31
SMARCC1-203ENST00000454240 KLRG2A4D1S0 409 aaPredicted RBP35.71■■■■□ 3.31
SMARCC1-203ENST00000454240 C2CD5Q86YS7 1000 aa35.71■■■■□ 3.31
SMARCC1-203ENST00000454240 RIC1Q4ADV7 1423 aa35.71■■■■□ 3.31
SMARCC1-203ENST00000454240 H0YIN7 160 aa35.7■■■■□ 3.31
SMARCC1-203ENST00000454240 CCDC191Q8NCU4 936 aa35.7■■■■□ 3.31
SMARCC1-203ENST00000454240 DNAAF4Q8WXU2 420 aa35.7■■■■□ 3.31
SMARCC1-203ENST00000454240 BCL2L13Q9BXK5 485 aa35.7■■■■□ 3.31
SMARCC1-203ENST00000454240 TRMT112Q9UI30 125 aaKnown RBP35.7■■■■□ 3.31
SMARCC1-203ENST00000454240 TNRC6CQ9HCJ0 1690 aaKnown RBP35.69■■■■□ 3.3
SMARCC1-203ENST00000454240 SLC10A5Q5PT55 438 aa35.69■■■■□ 3.3
SMARCC1-203ENST00000454240 IGKV5-2P06315 115 aa35.68■■■■□ 3.3
SMARCC1-203ENST00000454240 RARSP54136 660 aaKnown RBP35.68■■■■□ 3.3
SMARCC1-203ENST00000454240 NEXNQ0ZGT2 675 aa35.68■■■■□ 3.3
SMARCC1-203ENST00000454240 SMC4Q9NTJ3 1288 aa35.68■■■■□ 3.3
SMARCC1-203ENST00000454240 PIM2Q9P1W9 311 aa35.68■■■■□ 3.3
SMARCC1-203ENST00000454240 DCAF8L1A6NGE4 600 aa35.67■■■■□ 3.3
SMARCC1-203ENST00000454240 BRPF1P55201 1214 aaPredicted RBP35.67■■■■□ 3.3
SMARCC1-203ENST00000454240 GPR162Q16538 588 aa35.67■■■■□ 3.3
SMARCC1-203ENST00000454240 SH3TC1Q8TE82 1336 aa35.66■■■■□ 3.3
SMARCC1-203ENST00000454240 YBX3P16989 372 aaKnown RBP eCLIP35.66■■■■□ 3.31e-11■■□□□ 12.3
SMARCC1-203ENST00000454240 CWC25Q9NXE8 425 aaPredicted RBP35.66■■■■□ 3.3
SMARCC1-203ENST00000454240 WWC3Q9ULE0 1092 aa35.66■■■■□ 3.3
SMARCC1-203ENST00000454240 PTPRCP08575 1304 aa35.65■■■■□ 3.3
SMARCC1-203ENST00000454240 F6X3S4 739 aa35.65■■■■□ 3.3
SMARCC1-203ENST00000454240 SRGNP10124 158 aa35.65■■■■□ 3.3
SMARCC1-203ENST00000454240 PELP1Q8IZL8 1130 aaKnown RBP35.65■■■■□ 3.3
SMARCC1-203ENST00000454240 SYNE4Q8N205 404 aa35.65■■■■□ 3.3
SMARCC1-203ENST00000454240 ARFGEF1Q9Y6D6 1849 aa35.64■■■■□ 3.3
SMARCC1-203ENST00000454240 DDX60Q8IY21 1712 aaKnown RBP35.63■■■■□ 3.29
SMARCC1-203ENST00000454240 NEURL1BA8MQ27 555 aa35.63■■■■□ 3.29
SMARCC1-203ENST00000454240 CWF19L2Q2TBE0 894 aaKnown RBP35.63■■■■□ 3.29
SMARCC1-203ENST00000454240 ZBTB38Q8NAP3 1195 aaPredicted RBP35.63■■■■□ 3.29
SMARCC1-203ENST00000454240 FAM89AQ96GI7 184 aa35.63■■■■□ 3.29
SMARCC1-203ENST00000454240 LAMB2P55268 1798 aa35.63■■■■□ 3.29
SMARCC1-203ENST00000454240 UTRNP46939 3433 aa35.63■■■■□ 3.29
SMARCC1-203ENST00000454240 CRY2Q49AN0 593 aa35.62■■■■□ 3.29
SMARCC1-203ENST00000454240 LINS1Q8NG48 757 aa35.62■■■■□ 3.29
SMARCC1-203ENST00000454240 STYK1Q6J9G0 422 aa35.61■■■■□ 3.29
SMARCC1-203ENST00000454240 MASTLQ96GX5 879 aa35.61■■■■□ 3.29
SMARCC1-203ENST00000454240 DALRD3Q5D0E6 543 aaKnown RBP35.6■■■■□ 3.29
SMARCC1-203ENST00000454240 ZNF622Q969S3 477 aaKnown RBP eCLIP35.6■■■■□ 3.293e-11■□□□□ 9.8
SMARCC1-203ENST00000454240 NLRP3Q96P20 1036 aa35.6■■■■□ 3.29
SMARCC1-203ENST00000454240 BCS1LQ9Y276 419 aa35.6■■■■□ 3.29
SMARCC1-203ENST00000454240 PCCAP05165 728 aaPredicted RBP35.59■■■■□ 3.29
SMARCC1-203ENST00000454240 HCLS1P14317 486 aaPredicted RBP35.59■■■■□ 3.29
SMARCC1-203ENST00000454240 BEND3Q5T5X7 828 aa35.59■■■■□ 3.29
SMARCC1-203ENST00000454240 CACNA1SQ13698 1873 aa35.58■■■■□ 3.29
SMARCC1-203ENST00000454240 NPR1P16066 1061 aa35.58■■■■□ 3.29
SMARCC1-203ENST00000454240 C3orf67Q6ZVT6 689 aa35.58■■■■□ 3.29
SMARCC1-203ENST00000454240 TTLL6Q8N841 843 aa35.58■■■■□ 3.29
SMARCC1-203ENST00000454240 RTL5Q5HYW3 569 aaPredicted RBP35.57■■■■□ 3.28
SMARCC1-203ENST00000454240 GRIN3BO60391 1043 aa35.56■■■■□ 3.28
SMARCC1-203ENST00000454240 GCKRQ14397 625 aa35.56■■■■□ 3.28
SMARCC1-203ENST00000454240 NOB1Q9ULX3 412 aaKnown RBP35.56■■■■□ 3.28
SMARCC1-203ENST00000454240 SLX4Q8IY92 1834 aa35.55■■■■□ 3.28
SMARCC1-203ENST00000454240 CNKSR1Q969H4 720 aa35.55■■■■□ 3.28
SMARCC1-203ENST00000454240 IRS4O14654 1257 aaPredicted RBP35.54■■■■□ 3.28
SMARCC1-203ENST00000454240 SLC4A10Q6U841 1118 aa35.54■■■■□ 3.28
SMARCC1-203ENST00000454240 BCAR3O75815 825 aa35.53■■■■□ 3.28
SMARCC1-203ENST00000454240 HOXA10P31260 410 aaPredicted RBP35.53■■■■□ 3.28
SMARCC1-203ENST00000454240 JARID2Q92833 1246 aaPredicted RBP35.53■■■■□ 3.28
SMARCC1-203ENST00000454240 H7C1W4 665 aa35.52■■■■□ 3.28
SMARCC1-203ENST00000454240 KIF16BQ96L93 1317 aa35.52■■■■□ 3.28
SMARCC1-203ENST00000454240 CDHR2Q9BYE9 1310 aa35.52■■■■□ 3.28
SMARCC1-203ENST00000454240 RPGRQ92834 1020 aaKnown RBP35.51■■■■□ 3.28
SMARCC1-203ENST00000454240 YTHDC1Q96MU7 727 aaKnown RBP35.51■■■■□ 3.28
SMARCC1-203ENST00000454240 ALDH1L1O75891 902 aa35.5■■■■□ 3.27
SMARCC1-203ENST00000454240 HSP90B1P14625 803 aaKnown RBP35.5■■■■□ 3.27
SMARCC1-203ENST00000454240 ALDH1B1P30837 517 aa35.5■■■■□ 3.27
SMARCC1-203ENST00000454240 ARHGAP45Q92619 1136 aa35.5■■■■□ 3.27
SMARCC1-203ENST00000454240 SRCIN1Q9C0H9 1055 aa35.5■■■■□ 3.27
SMARCC1-203ENST00000454240 SF3B3Q15393 1217 aaKnown RBP35.49■■■■□ 3.27
SMARCC1-203ENST00000454240 MYH3P11055 1940 aa35.48■■■■□ 3.27
SMARCC1-203ENST00000454240 PRPF40BQ6NWY9 871 aaKnown RBP35.48■■■■□ 3.27
SMARCC1-203ENST00000454240 RBM17Q96I25 401 aaKnown RBP35.48■■■■□ 3.27
SMARCC1-203ENST00000454240 CRAMP1Q96RY5 1269 aa35.48■■■■□ 3.27
SMARCC1-203ENST00000454240 API5Q9BZZ5 524 aaKnown RBP35.48■■■■□ 3.27
SMARCC1-203ENST00000454240 CHD4Q14839 1912 aa35.47■■■■□ 3.27
SMARCC1-203ENST00000454240 CASP7P55210 303 aa35.47■■■■□ 3.27
SMARCC1-203ENST00000454240 UBE3BQ7Z3V4 1068 aa35.47■■■■□ 3.27
SMARCC1-203ENST00000454240 PDE8AO60658 829 aa35.46■■■■□ 3.27
SMARCC1-203ENST00000454240 TAF1P21675 1872 aa35.45■■■■□ 3.27
SMARCC1-203ENST00000454240 IPO8O15397 1037 aaKnown RBP35.44■■■■□ 3.26
SMARCC1-203ENST00000454240 C7orf43Q8WVR3 580 aa35.43■■■■□ 3.26
SMARCC1-203ENST00000454240 GRM8O00222 908 aa35.42■■■■□ 3.26
SMARCC1-203ENST00000454240 C21orf2O43822 256 aa35.41■■■■□ 3.26
SMARCC1-203ENST00000454240 PLA2G12BQ9BX93 195 aa35.41■■■■□ 3.26
SMARCC1-203ENST00000454240 ABCC4O15439 1325 aa35.4■■■■□ 3.26
SMARCC1-203ENST00000454240 ARHGAP27Q6ZUM4 889 aa35.4■■■■□ 3.26
SMARCC1-203ENST00000454240 DDX46Q7L014 1031 aaKnown RBP35.4■■■■□ 3.26
SMARCC1-203ENST00000454240 FRAT1Q92837 279 aaPredicted RBP35.4■■■■□ 3.26
SMARCC1-203ENST00000454240 FER1L6Q2WGJ9 1857 aa35.39■■■■□ 3.26
SMARCC1-203ENST00000454240 ATF7IPQ6VMQ6 1270 aa35.39■■■■□ 3.26
SMARCC1-203ENST00000454240 C9orf78Q9NZ63 289 aaPredicted RBP35.39■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms