RNA–Protein interactions for RNA: ENST00000452483.1

HMGB3P21-201, Transcript of high mobility group box 3 pseudogene 21, humanhuman

BASIC

Gene HMGB3P21, Length 547 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P21-201ENST00000452483 ATP4AP20648 1035 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 RASA1P20936 1047 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 MAPK1P28482 360 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 DBN1Q16643 649 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 FOXD4L6Q3SYB3 417 aaPredicted RBP5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 RNFT1Q5M7Z0 435 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 KANK4Q5T7N3 995 aaPredicted RBP5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 FOXD4L3Q6VB84 417 aaPredicted RBP5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 CNTNAP3BQ96NU0 1288 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 TINF2Q9BSI4 451 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 CNTNAP3Q9BZ76 1288 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 PIF1Q9H611 641 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 CAPN10Q9HC96 672 aa5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 SCHIP1Q9P0W5 487 aaPredicted RBP5.93□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L15C9J2P7 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L10C9JJH3 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L13C9JLJ4 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L12C9JPN9 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L11C9JVI0 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L21D6R901 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L18D6R9N7 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L22D6RA61 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L17D6RBQ6 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L19D6RCP7 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L20D6RJB6 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 GPR25O00155 361 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 THBS1P07996 1170 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 MSX1P28360 303 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 FOXK2Q01167 660 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 USP17L24Q0WX57 530 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 GAS6Q14393 721 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 TCEAL1Q15170 157 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 NBPF1Q3BBV0 1214 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 CRTC2Q53ET0 693 aaPredicted RBP5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 EAPPQ56P03 285 aaPredicted RBP5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 FOXR1Q6PIV2 292 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 NT5DC4Q86YG4 428 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 SLC9A9Q8IVB4 645 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 CCAR1Q8IX12 1150 aaKnown RBP5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 TNS4Q8IZW8 715 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 NLGN1Q8N2Q7 840 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 PGBD3Q8N328 593 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 ZSCAN1Q8NBB4 408 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 SLC43A3Q8NBI5 491 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 PMM1Q92871 262 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 GTPBP3Q969Y2 492 aaKnown RBP5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 ARMC5Q96C12 935 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 SPOCK3Q9BQ16 436 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 BRINP2Q9C0B6 783 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 RUBCNLQ9H714 662 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 CCSER2Q9H7U1 834 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 NLRP2Q9NX02 1062 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 CABP1Q9NZU7 370 aa5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 RBM19Q9Y4C8 960 aaKnown RBP5.92□□□□□ -1.46
HMGB3P21-201ENST00000452483 FAM196BA6NMK8 535 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 SFI1A8K8P3 1242 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 M0R2N6 131 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 SH3BP5O60239 455 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 DKK1O94907 266 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 LORP23490 312 aaPredicted RBP5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 ATP2B4P23634 1241 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 RAD51AP2Q09MP3 1159 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 GNL2Q13823 731 aaKnown RBP5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 LBRQ14739 615 aaKnown RBP5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 LARP1Q6PKG0 1096 aaKnown RBP5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 ZSCAN29Q8IWY8 852 aaPredicted RBP5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 TMTC2Q8N394 836 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 TSEN2Q8NCE0 465 aaKnown RBP5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 C1orf216Q8TAB5 229 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 SGSM3Q96HU1 749 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 TRERF1Q96PN7 1200 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 GABBR1Q9UBS5 961 aa5.91□□□□□ -1.46
HMGB3P21-201ENST00000452483 U2SURPO15042 1029 aaKnown RBP5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 ABL1P00519 1130 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 PTK7Q13308 1070 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 EFHC2Q5JST6 749 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 TBCELQ5QJ74 424 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 CCDC146Q8IYE0 955 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 ZDHHC1Q8WTX9 485 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 AIDAQ96BJ3 306 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 ASB16Q96NS5 453 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 TSPAN10Q9H1Z9 355 aaPredicted RBP5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 CRISPLD1Q9H336 500 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 ZDHHC3Q9NYG2 299 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 SLAIN2Q9P270 581 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 COL4A3BPQ9Y5P4 624 aa5.9□□□□□ -1.46
HMGB3P21-201ENST00000452483 TATP17735 454 aaPredicted RBP5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 SEC13P55735 322 aa5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 MRPL58Q14197 206 aaKnown RBP5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 LONRF3Q496Y0 759 aa5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 TMEM87AQ8NBN3 555 aa5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 CLP1Q92989 425 aaKnown RBP5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 TGIF2Q9GZN2 237 aa5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 MBIPQ9NS73 344 aa5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 PARP3Q9Y6F1 533 aa5.89□□□□□ -1.47
HMGB3P21-201ENST00000452483 H3BRB1 525 aa5.88□□□□□ -1.47
HMGB3P21-201ENST00000452483 PPFIA4O75335 1185 aa5.88□□□□□ -1.47
HMGB3P21-201ENST00000452483 DNAJA1P31689 397 aaKnown RBP5.88□□□□□ -1.47
HMGB3P21-201ENST00000452483 PSMA6P60900 246 aaKnown RBP5.88□□□□□ -1.47
HMGB3P21-201ENST00000452483 DPYDQ12882 1025 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms