RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-208	ENST00000449234	PROSER2	Q86WR7	435 aa	Predicted RBP	13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	IFNL2	Q8IZJ0	200 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	UPF3B	Q9BZI7	483 aa	Known RBP	13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	TSPY26P	Q9H489	355 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	COPRS	Q9NQ92	184 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	PDRG1	Q9NUG6	133 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	HMG20B	Q9P0W2	317 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	CCDC39	Q9UFE4	941 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	NOL7	Q9UMY1	257 aa	Known RBP	13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	CCDC171	Q6TFL3	1326 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	STX6	O43752	255 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	ZNF500	O60304	480 aa	Predicted RBP	13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	SASH1	O94885	1247 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	PDC	P20941	246 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	UBE2H	P62256	183 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	CWC27	Q6UX04	472 aa	Known RBP	13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	RUFY3	Q7L099	469 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	RIC3	Q7Z5B4	369 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	RASEF	Q8IZ41	740 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	SUCLG2	Q96I99	432 aa		13.76	□□□□□ -0.21
RFX3-208	ENST00000449234	MRC1	P22897	1456 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	TMEM94	Q12767	1356 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	NPHP3	Q7Z494	1330 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	OFD1	O75665	1012 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	SNRPA1	P09661	255 aa	Known RBP	13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	PHKG2	P15735	406 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	GCKR	Q14397	625 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	KRT32	Q14532	448 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	CCDC183	Q5T5S1	534 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	USP48	Q86UV5	1035 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	AACS	Q86V21	672 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	DCAF5	Q96JK2	942 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	IL25	Q9H293	177 aa		13.75	□□□□□ -0.21
RFX3-208	ENST00000449234	PXDN	Q92626	1479 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	ZBTB7C	A1YPR0	619 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	NEURL1B	A8MQ27	555 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	F13A1	P00488	732 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	ATP5J	P18859	108 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	SYT1	P21579	422 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	CHADL	Q6NUI6	762 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	CHMP4C	Q96CF2	233 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	KAZALD1	Q96I82	304 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	AXIN2	Q9Y2T1	843 aa		13.74	□□□□□ -0.21
RFX3-208	ENST00000449234	SCN11A	Q9UI33	1791 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	ALS2	Q96Q42	1657 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	SYCE3	A1L190	88 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	MAP4K4	O95819	1239 aa	Predicted RBP	13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	ANXA1	P04083	346 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	IGKV5-2	P06315	115 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	CAST	P20810	708 aa	Known RBP	13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	PROSER3	Q2NL68	480 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	RABL6	Q3YEC7	729 aa	Predicted RBP	13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	USPL1	Q5W0Q7	1092 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	CREB3L3	Q68CJ9	461 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	ANKRD13D	Q6ZTN6	518 aa		13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	EAF2	Q96CJ1	260 aa	Predicted RBP	13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	BICC1	Q9H694	974 aa	Known RBP	13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	RBM27	Q9P2N5	1060 aa	Known RBP	13.73	□□□□□ -0.21
RFX3-208	ENST00000449234	JCAD	Q9P266	1359 aa		13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	PTH1R	Q03431	593 aa		13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	CWF19L2	Q2TBE0	894 aa	Known RBP	13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	JAKMIP1	Q96N16	626 aa	Known RBP	13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	FMNL2	Q96PY5	1086 aa		13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	GPR108	Q9NPR9	543 aa		13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	CREBZF	Q9NS37	354 aa		13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	RBM8A	Q9Y5S9	174 aa	Known RBP	13.72	□□□□□ -0.21
RFX3-208	ENST00000449234	PRPF40B	Q6NWY9	871 aa	Known RBP	13.71	□□□□□ -0.21
RFX3-208	ENST00000449234	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.71	□□□□□ -0.21
RFX3-208	ENST00000449234	PA2G4	Q9UQ80	394 aa	Known RBP	13.71	□□□□□ -0.21
RFX3-208	ENST00000449234	ZKSCAN5	Q9Y2L8	839 aa		13.71	□□□□□ -0.21
RFX3-208	ENST00000449234	HAX1	O00165	279 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	SLC27A2	O14975	620 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	ATF3	P18847	181 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	KCNJ4	P48050	445 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	NMI	Q13287	307 aa	Predicted RBP	13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	BLOC1S2	Q6QNY1	142 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	COPS6	Q7L5N1	327 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	LRP10	Q7Z4F1	713 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	TTC5	Q8N0Z6	440 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	PLBD2	Q8NHP8	589 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	XAGE3	Q8WTP9	111 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	MTMR6	Q9Y217	621 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	CPD	O75976	1380 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	MED23	Q9ULK4	1368 aa		13.7	□□□□□ -0.22
RFX3-208	ENST00000449234	ELP1	O95163	1332 aa		13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	TPM3	P06753	285 aa		13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	GJB2	P29033	226 aa		13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	RFX5	P48382	616 aa	Predicted RBP	13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	LMOD2	Q6P5Q4	547 aa		13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	ATG3	Q9NT62	314 aa		13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	NLRP2	Q9NX02	1062 aa		13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	KDM6A	O15550	1401 aa	Predicted RBP	13.69	□□□□□ -0.22
RFX3-208	ENST00000449234	COL18A1	P39060	1754 aa		13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	C19orf67	A6NJJ6	358 aa		13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	HMGB1	P09429	215 aa	Known RBP	13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	RPS6KB1	P23443	525 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms