RNA–Protein interactions for RNA: ENST00000444415.7

TRAF4-205, Transcript of TNF receptor associated factor 4, humanhuman

TSL 5 BASIC

Gene TRAF4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-205ENST00000444415 VAMP4O75379 141 aa28.17■■■□□ 2.1
TRAF4-205ENST00000444415 CRY2Q49AN0 593 aa28.17■■■□□ 2.1
TRAF4-205ENST00000444415 HSP90AB3PQ58FF7 597 aa28.17■■■□□ 2.1
TRAF4-205ENST00000444415 ZNF428Q96B54 188 aa28.17■■■□□ 2.1
TRAF4-205ENST00000444415 MASTLQ96GX5 879 aa28.17■■■□□ 2.1
TRAF4-205ENST00000444415 ISCA1Q9BUE6 129 aa28.17■■■□□ 2.1
TRAF4-205ENST00000444415 DDX60Q8IY21 1712 aaKnown RBP28.17■■■□□ 2.1
TRAF4-205ENST00000444415 SYNE4Q8N205 404 aa28.16■■■□□ 2.1
TRAF4-205ENST00000444415 GTF2E1P29083 439 aaPredicted RBP28.15■■■□□ 2.1
TRAF4-205ENST00000444415 PRELPP51888 382 aa28.15■■■□□ 2.1
TRAF4-205ENST00000444415 G2E3Q7L622 706 aa28.15■■■□□ 2.1
TRAF4-205ENST00000444415 PPP1R42Q7Z4L9 355 aa28.15■■■□□ 2.1
TRAF4-205ENST00000444415 CCDC88AQ3V6T2 1871 aa28.15■■■□□ 2.1
TRAF4-205ENST00000444415 GOLGA2Q08379 1002 aa28.15■■■□□ 2.1
TRAF4-205ENST00000444415 PRPF40BQ6NWY9 871 aaKnown RBP28.15■■■□□ 2.1
TRAF4-205ENST00000444415 UTP14AQ9BVJ6 771 aaKnown RBP28.15■■■□□ 2.1
TRAF4-205ENST00000444415 ATP5J2-PTCD1G3V325 749 aa28.14■■■□□ 2.09
TRAF4-205ENST00000444415 NPR1P16066 1061 aa28.14■■■□□ 2.09
TRAF4-205ENST00000444415 RASSF7Q02833 373 aa28.14■■■□□ 2.09
TRAF4-205ENST00000444415 NFKBIEO00221 500 aa28.13■■■□□ 2.09
TRAF4-205ENST00000444415 MYH16Q9H6N6 1097 aa28.13■■■□□ 2.09
TRAF4-205ENST00000444415 SLC10A5Q5PT55 438 aa28.12■■■□□ 2.09
TRAF4-205ENST00000444415 C7orf43Q8WVR3 580 aa28.12■■■□□ 2.09
TRAF4-205ENST00000444415 CNKSR1Q969H4 720 aa28.12■■■□□ 2.09
TRAF4-205ENST00000444415 C21orf2O43822 256 aa28.11■■■□□ 2.09
TRAF4-205ENST00000444415 ZNF219Q9P2Y4 722 aaPredicted RBP28.11■■■□□ 2.09
TRAF4-205ENST00000444415 RNF123Q5XPI4 1314 aa28.11■■■□□ 2.09
TRAF4-205ENST00000444415 RIC3Q7Z5B4 369 aa28.1■■■□□ 2.09
TRAF4-205ENST00000444415 SLC4A2P04920 1241 aa28.09■■■□□ 2.09
TRAF4-205ENST00000444415 TRIM28Q13263 835 aaKnown RBP28.09■■■□□ 2.09
TRAF4-205ENST00000444415 SLC51AQ86UW1 340 aa28.09■■■□□ 2.09
TRAF4-205ENST00000444415 STK31Q9BXU1 1019 aa28.09■■■□□ 2.09
TRAF4-205ENST00000444415 CHMP4AQ9BY43 222 aa28.09■■■□□ 2.09
TRAF4-205ENST00000444415 SNED1Q8TER0 1413 aa28.09■■■□□ 2.09
TRAF4-205ENST00000444415 TAF1P21675 1872 aa28.08■■■□□ 2.09
TRAF4-205ENST00000444415 TRMT112Q9UI30 125 aaKnown RBP28.08■■■□□ 2.09
TRAF4-205ENST00000444415 HCLS1P14317 486 aaPredicted RBP28.08■■■□□ 2.09
TRAF4-205ENST00000444415 HOXA10P31260 410 aaPredicted RBP28.08■■■□□ 2.09
TRAF4-205ENST00000444415 C9orf131Q5VYM1 1079 aa28.08■■■□□ 2.09
TRAF4-205ENST00000444415 OLFM4Q6UX06 510 aa28.08■■■□□ 2.09
TRAF4-205ENST00000444415 CDCA7LQ96GN5 454 aa28.08■■■□□ 2.09
TRAF4-205ENST00000444415 MYD88Q99836 296 aa28.08■■■□□ 2.09
TRAF4-205ENST00000444415 SH3TC1Q8TE82 1336 aa28.07■■■□□ 2.08
TRAF4-205ENST00000444415 PI4KAP2A4QPH2 592 aa28.07■■■□□ 2.08
TRAF4-205ENST00000444415 PI4KAP1Q8N8J0 262 aa28.07■■■□□ 2.08
TRAF4-205ENST00000444415 MAP3K2Q9Y2U5 619 aa28.07■■■□□ 2.08
TRAF4-205ENST00000444415 SLFN5Q08AF3 891 aa28.06■■■□□ 2.08
TRAF4-205ENST00000444415 KSR2Q6VAB6 950 aa28.06■■■□□ 2.08
TRAF4-205ENST00000444415 METTL22Q9BUU2 404 aaPredicted RBP28.06■■■□□ 2.08
TRAF4-205ENST00000444415 COL4A1P02462 1669 aa28.06■■■□□ 2.08
TRAF4-205ENST00000444415 DICER1Q9UPY3 1922 aaKnown RBP28.05■■■□□ 2.08
TRAF4-205ENST00000444415 FAM89AQ96GI7 184 aa28.05■■■□□ 2.08
TRAF4-205ENST00000444415 TIAM2Q8IVF5 1701 aa28.05■■■□□ 2.08
TRAF4-205ENST00000444415 FLIIQ13045 1269 aa28.04■■■□□ 2.08
TRAF4-205ENST00000444415 E9PSI1 815 aa28.03■■■□□ 2.08
TRAF4-205ENST00000444415 DDX58O95786 925 aaKnown RBP28.03■■■□□ 2.08
TRAF4-205ENST00000444415 IGKV5-2P06315 115 aa28.03■■■□□ 2.08
TRAF4-205ENST00000444415 NLRP3Q96P20 1036 aa28.03■■■□□ 2.08
TRAF4-205ENST00000444415 TRMT2AQ8IZ69 625 aaKnown RBP28.02■■■□□ 2.08
TRAF4-205ENST00000444415 RNF181Q9P0P0 153 aa28.02■■■□□ 2.08
TRAF4-205ENST00000444415 RTL5Q5HYW3 569 aaPredicted RBP28.02■■■□□ 2.08
TRAF4-205ENST00000444415 RPGRQ92834 1020 aaKnown RBP28.02■■■□□ 2.08
TRAF4-205ENST00000444415 ALDH1B1P30837 517 aa28.01■■■□□ 2.07
TRAF4-205ENST00000444415 LTBP3Q9NS15 1303 aa28.01■■■□□ 2.07
TRAF4-205ENST00000444415 CCDC191Q8NCU4 936 aa28■■■□□ 2.07
TRAF4-205ENST00000444415 CRAMP1Q96RY5 1269 aa28■■■□□ 2.07
TRAF4-205ENST00000444415 ABCC4O15439 1325 aa28■■■□□ 2.07
TRAF4-205ENST00000444415 LMNB1P20700 586 aa27.99■■■□□ 2.07
TRAF4-205ENST00000444415 ZBTB38Q8NAP3 1195 aaPredicted RBP27.98■■■□□ 2.07
TRAF4-205ENST00000444415 ZNF526Q8TF50 670 aaPredicted RBP27.98■■■□□ 2.07
TRAF4-205ENST00000444415 CWF19L2Q2TBE0 894 aaKnown RBP27.97■■■□□ 2.07
TRAF4-205ENST00000444415 CCDC93Q567U6 631 aa27.97■■■□□ 2.07
TRAF4-205ENST00000444415 JARID2Q92833 1246 aaPredicted RBP27.97■■■□□ 2.07
TRAF4-205ENST00000444415 RBM17Q96I25 401 aaKnown RBP27.97■■■□□ 2.07
TRAF4-205ENST00000444415 FKBP5Q13451 457 aaPredicted RBP27.96■■■□□ 2.07
TRAF4-205ENST00000444415 TAOK3Q9H2K8 898 aa27.96■■■□□ 2.07
TRAF4-205ENST00000444415 CWC25Q9NXE8 425 aaPredicted RBP27.96■■■□□ 2.07
TRAF4-205ENST00000444415 IRS4O14654 1257 aaPredicted RBP27.95■■■□□ 2.07
TRAF4-205ENST00000444415 PCCAP05165 728 aaPredicted RBP27.95■■■□□ 2.07
TRAF4-205ENST00000444415 SOGA3Q5TF21 947 aa27.95■■■□□ 2.07
TRAF4-205ENST00000444415 NEURL1BA8MQ27 555 aa27.95■■■□□ 2.06
TRAF4-205ENST00000444415 SF3B3Q15393 1217 aaKnown RBP27.95■■■□□ 2.06
TRAF4-205ENST00000444415 LRRC37AA6NMS7 1700 aa27.95■■■□□ 2.06
TRAF4-205ENST00000444415 MYH3P11055 1940 aa27.94■■■□□ 2.06
TRAF4-205ENST00000444415 DNAAF4Q8WXU2 420 aa27.94■■■□□ 2.06
TRAF4-205ENST00000444415 F6X3S4 739 aa27.93■■■□□ 2.06
TRAF4-205ENST00000444415 PPEF1O14829 653 aaPredicted RBP27.93■■■□□ 2.06
TRAF4-205ENST00000444415 COL4A5P29400 1685 aa27.92■■■□□ 2.06
TRAF4-205ENST00000444415 FKBP4Q02790 459 aaKnown RBP eCLIP27.91■■■□□ 2.06
TRAF4-205ENST00000444415 GPBP1L1Q9HC44 474 aaPredicted RBP27.91■■■□□ 2.06
TRAF4-205ENST00000444415 MRPL50Q8N5N7 158 aaKnown RBP27.9■■■□□ 2.06
TRAF4-205ENST00000444415 CDHR2Q9BYE9 1310 aa27.9■■■□□ 2.06
TRAF4-205ENST00000444415 ZC3H4Q9UPT8 1303 aaKnown RBP27.9■■■□□ 2.06
TRAF4-205ENST00000444415 NEXNQ0ZGT2 675 aa27.89■■■□□ 2.06
TRAF4-205ENST00000444415 GRAPQ13588 217 aa27.89■■■□□ 2.06
TRAF4-205ENST00000444415 GRAPLQ8TC17 118 aaPredicted RBP27.89■■■□□ 2.06
TRAF4-205ENST00000444415 SSH1Q8WYL5 1049 aa27.89■■■□□ 2.06
TRAF4-205ENST00000444415 RTKN2Q8IZC4 609 aa27.89■■■□□ 2.05
TRAF4-205ENST00000444415 CELF1Q92879 486 aaKnown RBP27.89■■■□□ 2.05
TRAF4-205ENST00000444415 ZNF277Q9NRM2 450 aaPredicted RBP27.89■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms