RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 ZMIZ1Q9ULJ6 1067 aa9.27□□□□□ -0.93
VPS50-206ENST00000443443 ACIN1Q9UKV3 1341 aaKnown RBP9.27□□□□□ -0.93
VPS50-206ENST00000443443 SRPK2P78362 688 aaKnown RBP9.26□□□□□ -0.93
VPS50-206ENST00000443443 SWI5Q1ZZU3 235 aa9.26□□□□□ -0.93
VPS50-206ENST00000443443 ATG7O95352 703 aa9.25□□□□□ -0.93
VPS50-206ENST00000443443 BHMTQ93088 406 aa9.25□□□□□ -0.93
VPS50-206ENST00000443443 PBXIP1Q96AQ6 731 aa9.25□□□□□ -0.93
VPS50-206ENST00000443443 IGFLR1Q9H665 355 aa9.25□□□□□ -0.93
VPS50-206ENST00000443443 ELOA3CA0A087WX78 387 aaPredicted RBP9.24□□□□□ -0.93
VPS50-206ENST00000443443 ELOA3DA6NLF2 546 aaPredicted RBP9.24□□□□□ -0.93
VPS50-206ENST00000443443 TGFBR3LH3BV60 316 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 SIN3BO75182 1162 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 KCNQ4P56696 695 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 TBC1D8BQ0IIM8 1120 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 FKBP5Q13451 457 aaPredicted RBP9.24□□□□□ -0.93
VPS50-206ENST00000443443 C11orf91Q3C1V1 193 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 ELOA3BQ3SY89 546 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 ELOA3Q8NG57 546 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 QTRT2Q9H974 415 aaKnown RBP9.24□□□□□ -0.93
VPS50-206ENST00000443443 BCS1LQ9Y276 419 aa9.24□□□□□ -0.93
VPS50-206ENST00000443443 PIK3R2O00459 728 aa9.23□□□□□ -0.93
VPS50-206ENST00000443443 IER5Q5VY09 327 aa9.23□□□□□ -0.93
VPS50-206ENST00000443443 LINC00114Q6XXX2 140 aa9.23□□□□□ -0.93
VPS50-206ENST00000443443 DCAF5Q96JK2 942 aa9.23□□□□□ -0.93
VPS50-206ENST00000443443 PNMA5Q96PV4 448 aa9.23□□□□□ -0.93
VPS50-206ENST00000443443 EPB42P16452 691 aa9.22□□□□□ -0.93
VPS50-206ENST00000443443 IDH3AP50213 366 aa9.22□□□□□ -0.93
VPS50-206ENST00000443443 TMEM164Q5U3C3 297 aa9.22□□□□□ -0.93
VPS50-206ENST00000443443 CCDC82Q8N4S0 544 aa9.22□□□□□ -0.93
VPS50-206ENST00000443443 GNB5O14775 395 aa9.21□□□□□ -0.94
VPS50-206ENST00000443443 MICAL2O94851 1124 aa9.21□□□□□ -0.94
VPS50-206ENST00000443443 HOXB4P17483 251 aaPredicted RBP9.21□□□□□ -0.94
VPS50-206ENST00000443443 FAM69CQ0P6D2 419 aa9.21□□□□□ -0.94
VPS50-206ENST00000443443 IFT43Q96FT9 208 aa9.21□□□□□ -0.94
VPS50-206ENST00000443443 CCINQ13939 588 aa9.2□□□□□ -0.94
VPS50-206ENST00000443443 MKNK1Q9BUB5 465 aa9.2□□□□□ -0.94
VPS50-206ENST00000443443 SUV39H2Q9H5I1 410 aa9.2□□□□□ -0.94
VPS50-206ENST00000443443 DMGDHQ9UI17 866 aaKnown RBP9.2□□□□□ -0.94
VPS50-206ENST00000443443 ADARB2-AS1A8MUL3 147 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 ADH7P40394 386 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 DGKGP49619 791 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 OCLNQ16625 522 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 COX20Q5RI15 118 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 TNFRSF25Q93038 417 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 MYO19Q96H55 970 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 GSX2Q9BZM3 304 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 UBE2OQ9C0C9 1292 aaKnown RBP9.19□□□□□ -0.94
VPS50-206ENST00000443443 LRFN2Q9ULH4 789 aa9.19□□□□□ -0.94
VPS50-206ENST00000443443 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.19□□□□□ -0.94
VPS50-206ENST00000443443 ITGB2P05107 769 aa9.18□□□□□ -0.94
VPS50-206ENST00000443443 INPP5BP32019 993 aa9.18□□□□□ -0.94
VPS50-206ENST00000443443 ARSDP51689 593 aa9.18□□□□□ -0.94
VPS50-206ENST00000443443 NAA30Q147X3 362 aaPredicted RBP9.18□□□□□ -0.94
VPS50-206ENST00000443443 NFKB1P19838 968 aa9.17□□□□□ -0.94
VPS50-206ENST00000443443 COL8A1P27658 744 aa9.17□□□□□ -0.94
VPS50-206ENST00000443443 PLA2G4EQ3MJ16 856 aa9.17□□□□□ -0.94
VPS50-206ENST00000443443 KRT25Q7Z3Z0 450 aa9.17□□□□□ -0.94
VPS50-206ENST00000443443 NOP53Q9NZM5 478 aaKnown RBP9.17□□□□□ -0.94
VPS50-206ENST00000443443 CXXC1Q9P0U4 656 aaPredicted RBP9.17□□□□□ -0.94
VPS50-206ENST00000443443 USP20Q9Y2K6 914 aa9.17□□□□□ -0.94
VPS50-206ENST00000443443 M0R082 166 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 IGHA1P01876 353 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 C16orf46Q6P387 395 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 CAPN12Q6ZSI9 719 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 TREML1Q86YW5 311 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 CMTR1Q8N1G2 835 aaKnown RBP9.16□□□□□ -0.94
VPS50-206ENST00000443443 ZNF417Q8TAU3 575 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 ZNF587Q96SQ5 575 aaPredicted RBP9.16□□□□□ -0.94
VPS50-206ENST00000443443 PLVAPQ9BX97 442 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 SAP130Q9H0E3 1048 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 EFCC1Q9HA90 598 aa9.16□□□□□ -0.94
VPS50-206ENST00000443443 BRD2P25440 801 aaKnown RBP9.15□□□□□ -0.94
VPS50-206ENST00000443443 RGL4Q8IZJ4 473 aa9.15□□□□□ -0.94
VPS50-206ENST00000443443 C1orf115Q9H7X2 142 aa9.15□□□□□ -0.94
VPS50-206ENST00000443443 RTCBQ9Y3I0 505 aaKnown RBP9.15□□□□□ -0.94
VPS50-206ENST00000443443 KRBA1A5PL33 1030 aa9.14□□□□□ -0.95
VPS50-206ENST00000443443 OPLAHO14841 1288 aa9.14□□□□□ -0.95
VPS50-206ENST00000443443 PTCD1O75127 700 aaKnown RBP9.14□□□□□ -0.95
VPS50-206ENST00000443443 SASH3O75995 380 aa9.14□□□□□ -0.95
VPS50-206ENST00000443443 TARSP26639 723 aaKnown RBP9.14□□□□□ -0.95
VPS50-206ENST00000443443 ALYREFQ86V81 257 aaKnown RBP9.14□□□□□ -0.95
VPS50-206ENST00000443443 CLP1Q92989 425 aaKnown RBP9.14□□□□□ -0.95
VPS50-206ENST00000443443 MDFIQ99750 246 aa9.14□□□□□ -0.95
VPS50-206ENST00000443443 STARD13Q9Y3M8 1113 aa9.14□□□□□ -0.95
VPS50-206ENST00000443443 MSTNO14793 375 aa9.13□□□□□ -0.95
VPS50-206ENST00000443443 ALBP02768 609 aa9.13□□□□□ -0.95
VPS50-206ENST00000443443 ATP2B4P23634 1241 aa9.13□□□□□ -0.95
VPS50-206ENST00000443443 C8orf86Q6ZUL3 223 aa9.13□□□□□ -0.95
VPS50-206ENST00000443443 MICALL1Q8N3F8 863 aa9.13□□□□□ -0.95
VPS50-206ENST00000443443 TRIM11Q96F44 468 aa9.13□□□□□ -0.95
VPS50-206ENST00000443443 DNAJB12Q9NXW2 375 aaKnown RBP9.13□□□□□ -0.95
VPS50-206ENST00000443443 GRNP28799 593 aaKnown RBP9.12□□□□□ -0.95
VPS50-206ENST00000443443 NUDT8Q8WV74 236 aa9.12□□□□□ -0.95
VPS50-206ENST00000443443 COL26A1Q96A83 441 aa9.12□□□□□ -0.95
VPS50-206ENST00000443443 SPOCK3Q9BQ16 436 aa9.12□□□□□ -0.95
VPS50-206ENST00000443443 SLC6A14Q9UN76 642 aa9.12□□□□□ -0.95
VPS50-206ENST00000443443 SPDYE3A6NKU9 549 aa9.11□□□□□ -0.95
VPS50-206ENST00000443443 XYLBO75191 536 aa9.11□□□□□ -0.95
VPS50-206ENST00000443443 PPP1R15AO75807 674 aaPredicted RBP9.11□□□□□ -0.95
VPS50-206ENST00000443443 RARAP10276 462 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms