RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 CCDC171Q6TFL3 1326 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 TPM4P67936 248 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 CEP57L1Q8IYX8 460 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 PI4K2BQ8TCG2 481 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 CFAP45Q9UL16 551 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 AOPEPQ8N6M6 819 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 SSH3Q8TE77 659 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 EVI5LQ96CN4 794 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 NDUFB9Q9Y6M9 179 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 CD163L1Q9NR16 1453 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 MYO3AQ8NEV4 1616 aa10.64□□□□□ -0.71
COPB1-202ENST00000439561 CWF19L2Q2TBE0 894 aaKnown RBP10.63□□□□□ -0.71
COPB1-202ENST00000439561 EDC3Q96F86 508 aaKnown RBP10.63□□□□□ -0.71
COPB1-202ENST00000439561 CCDC144BQ3MJ40 725 aa10.63□□□□□ -0.71
COPB1-202ENST00000439561 TMC6Q7Z403 805 aa10.63□□□□□ -0.71
COPB1-202ENST00000439561 CCDC144CPQ8IYA2 1237 aa10.63□□□□□ -0.71
COPB1-202ENST00000439561 FSIP1Q8NA03 581 aa10.63□□□□□ -0.71
COPB1-202ENST00000439561 CLSTN2Q9H4D0 955 aa10.63□□□□□ -0.71
COPB1-202ENST00000439561 SNW1Q13573 536 aaKnown RBP10.63□□□□□ -0.71
COPB1-202ENST00000439561 ABTB2Q8N961 1025 aa10.63□□□□□ -0.71
COPB1-202ENST00000439561 ZNF397Q8NF99 534 aaPredicted RBP10.63□□□□□ -0.71
COPB1-202ENST00000439561 KLHDC4Q8TBB5 520 aa10.63□□□□□ -0.71
COPB1-202ENST00000439561 NAT10Q9H0A0 1025 aaKnown RBP10.63□□□□□ -0.71
COPB1-202ENST00000439561 ZC3H13Q5T200 1668 aaKnown RBP10.63□□□□□ -0.71
COPB1-202ENST00000439561 USP27XA6NNY8 438 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 SLC27A2O14975 620 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 RIC3Q7Z5B4 369 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 FTOQ9C0B1 505 aaKnown RBP eCLIP10.62□□□□□ -0.713e-14■□□□□ 8.6
COPB1-202ENST00000439561 MAP3K2Q9Y2U5 619 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 STX1AQ16623 288 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 SYT10Q6XYQ8 523 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 ERC1Q8IUD2 1116 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 NEUROD6Q96NK8 337 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 CPSF1Q10570 1443 aaKnown RBP10.62□□□□□ -0.71
COPB1-202ENST00000439561 PTPRMP28827 1452 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 HIP1O00291 1037 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 SFPQP23246 707 aaKnown RBP eCLIP10.62□□□□□ -0.71
COPB1-202ENST00000439561 MPRIPQ6WCQ1 1025 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 STK11IPQ8N1F8 1099 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 ZFP91Q96JP5 570 aaPredicted RBP10.62□□□□□ -0.71
COPB1-202ENST00000439561 ZSWIM6Q9HCJ5 1215 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 VWDEQ8N2E2 1590 aa10.62□□□□□ -0.71
COPB1-202ENST00000439561 CDK12Q9NYV4 1490 aaPredicted RBP10.61□□□□□ -0.71
COPB1-202ENST00000439561 REREQ9P2R6 1566 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 INO80Q9ULG1 1556 aaPredicted RBP10.61□□□□□ -0.71
COPB1-202ENST00000439561 BTBD11A6QL63 1104 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 URI1O94763 535 aaPredicted RBP10.61□□□□□ -0.71
COPB1-202ENST00000439561 SLU7O95391 586 aaKnown RBP10.61□□□□□ -0.71
COPB1-202ENST00000439561 MYL6BP14649 208 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 STK38Q15208 465 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 TAF3Q5VWG9 929 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 Q6ZUG5 572 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 RAB11FIP4Q86YS3 637 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 PDILTQ8N807 584 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 ANKRD7Q92527 254 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 UBXN4Q92575 508 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 NOL10Q9BSC4 688 aaKnown RBP10.61□□□□□ -0.71
COPB1-202ENST00000439561 FUCA2Q9BTY2 467 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 ST7Q9NRC1 585 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 CTNNA3Q9UI47 895 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 DEPDC5O75140 1603 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 USP32Q8NFA0 1604 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 CCDC129Q6ZRS4 1044 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 C11orf57Q6ZUT1 292 aaPredicted RBP10.61□□□□□ -0.71
COPB1-202ENST00000439561 ANO10Q9NW15 660 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 ARGLU1Q9NWB6 273 aaPredicted RBP10.61□□□□□ -0.71
COPB1-202ENST00000439561 HDAC5Q9UQL6 1122 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 AOX1Q06278 1338 aa10.61□□□□□ -0.71
COPB1-202ENST00000439561 ERCC6LQ2NKX8 1250 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 TEX35Q5T0J7 233 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 CHST3Q7LGC8 479 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 LRRC8AQ8IWT6 810 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 IL17REQ8NFR9 667 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 A0A0D9SFI3 127 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 HSP90AA4PQ58FG1 418 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 NEK1Q96PY6 1258 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 DNAI1Q9UI46 699 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 SALL3Q9BXA9 1300 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 AATKQ6ZMQ8 1374 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 POLR3DP05423 398 aaPredicted RBP10.6□□□□□ -0.71
COPB1-202ENST00000439561 GABPB1Q06547 395 aaPredicted RBP10.6□□□□□ -0.71
COPB1-202ENST00000439561 ARHGAP31Q2M1Z3 1444 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 C1orf141Q5JVX7 400 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 TTC41PQ6P2S7 1318 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 ZNF530Q6P9A1 599 aaPredicted RBP10.6□□□□□ -0.71
COPB1-202ENST00000439561 PLCD3Q8N3E9 789 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 MROH1Q8NDA8 1641 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 TIGD1Q96MW7 591 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 PRR36Q9H6K5 1346 aa10.6□□□□□ -0.71
COPB1-202ENST00000439561 KCNQ3O43525 872 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 SERPINC1P01008 464 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 RPS6KB1P23443 525 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 NEXNQ0ZGT2 675 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 ARHGAP29Q52LW3 1261 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 ZNF396Q96N95 335 aaPredicted RBP10.59□□□□□ -0.71
COPB1-202ENST00000439561 UHRF1BP1LA0JNW5 1464 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 FBXO38Q6PIJ6 1188 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 TMCO3Q6UWJ1 677 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 DDX41Q9UJV9 622 aaKnown RBP10.59□□□□□ -0.71
COPB1-202ENST00000439561 TCHHQ07283 1943 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms