RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 NBPF5PQ86XG9 351 aaPredicted RBP19.84■□□□□ 0.77
PTPRF-209ENST00000438120 NBPF4Q96M43 638 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 STX8Q9UNK0 236 aa19.83■□□□□ 0.77
PTPRF-209ENST00000438120 ANAPC15P60006 121 aa19.83■□□□□ 0.77
PTPRF-209ENST00000438120 RHPN1Q8TCX5 695 aa19.83■□□□□ 0.77
PTPRF-209ENST00000438120 TEX13AQ9BXU3 409 aaPredicted RBP19.83■□□□□ 0.77
PTPRF-209ENST00000438120 XAGE3Q8WTP9 111 aa19.83■□□□□ 0.77
PTPRF-209ENST00000438120 DYDC1Q8WWB3 177 aa19.83■□□□□ 0.77
PTPRF-209ENST00000438120 CALML4Q96GE6 196 aa19.83■□□□□ 0.77
PTPRF-209ENST00000438120 TCP11L1Q9NUJ3 509 aa19.83■□□□□ 0.77
PTPRF-209ENST00000438120 BAG3O95817 575 aa19.83■□□□□ 0.76
PTPRF-209ENST00000438120 CCDC40Q4G0X9 1142 aa19.83■□□□□ 0.76
PTPRF-209ENST00000438120 KIF18AQ8NI77 898 aa19.83■□□□□ 0.76
PTPRF-209ENST00000438120 BRF1Q92994 677 aa19.82■□□□□ 0.76
PTPRF-209ENST00000438120 GSTTP1A0A1W2PQM5 241 aa19.82■□□□□ 0.76
PTPRF-209ENST00000438120 BMP2KLQ5H9B9 411 aa19.82■□□□□ 0.76
PTPRF-209ENST00000438120 MMRN2Q9H8L6 949 aa19.82■□□□□ 0.76
PTPRF-209ENST00000438120 KIF5BP33176 963 aa19.82■□□□□ 0.76
PTPRF-209ENST00000438120 YEATS4O95619 227 aa19.82■□□□□ 0.76
PTPRF-209ENST00000438120 CTAGE5O15320 804 aa19.82■□□□□ 0.76
PTPRF-209ENST00000438120 FGFR1OPO95684 399 aaKnown RBP19.81■□□□□ 0.76
PTPRF-209ENST00000438120 COPS6Q7L5N1 327 aa19.81■□□□□ 0.76
PTPRF-209ENST00000438120 WWC3Q9ULE0 1092 aa19.81■□□□□ 0.76
PTPRF-209ENST00000438120 LDHCP07864 332 aa19.81■□□□□ 0.76
PTPRF-209ENST00000438120 BCCIPQ9P287 314 aaKnown RBP eCLIP19.81■□□□□ 0.76
PTPRF-209ENST00000438120 CABP5Q9NP86 173 aa19.81■□□□□ 0.76
PTPRF-209ENST00000438120 DDX19AQ9NUU7 478 aaKnown RBP19.81■□□□□ 0.76
PTPRF-209ENST00000438120 KLF18A0A0U1RQI7 1052 aa19.8■□□□□ 0.76
PTPRF-209ENST00000438120 NCOA1Q15788 1441 aa19.8■□□□□ 0.76
PTPRF-209ENST00000438120 EHMT1Q9H9B1 1298 aa19.8■□□□□ 0.76
PTPRF-209ENST00000438120 UBA7P41226 1012 aa19.8■□□□□ 0.76
PTPRF-209ENST00000438120 SDSP20132 328 aa19.8■□□□□ 0.76
PTPRF-209ENST00000438120 HSP90AA4PQ58FG1 418 aa19.8■□□□□ 0.76
PTPRF-209ENST00000438120 HMGB2P26583 209 aaKnown RBP19.79■□□□□ 0.76
PTPRF-209ENST00000438120 TMCO5BA8MYB1 307 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 ATP6V1AP38606 617 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 STX1AQ16623 288 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 ZRANB1Q9UGI0 708 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 HMGXB3Q12766 1538 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 USO1O60763 962 aaKnown RBP19.79■□□□□ 0.76
PTPRF-209ENST00000438120 ADCY5O95622 1261 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 HLA-DOAP06340 250 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 CCDC150Q8NCX0 1101 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 CYP7A1P22680 504 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 IFFO1Q0D2I5 559 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 CCDC152Q4G0S7 254 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 CCDC12Q8WUD4 166 aaPredicted RBP19.79■□□□□ 0.76
PTPRF-209ENST00000438120 CBX1P83916 185 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 SYCP3Q8IZU3 236 aa19.79■□□□□ 0.76
PTPRF-209ENST00000438120 PRPF4BQ13523 1007 aaKnown RBP19.78■□□□□ 0.76
PTPRF-209ENST00000438120 ABCA10Q8WWZ4 1543 aa19.78■□□□□ 0.76
PTPRF-209ENST00000438120 WDHD1O75717 1129 aaPredicted RBP19.78■□□□□ 0.76
PTPRF-209ENST00000438120 CRNKL1Q9BZJ0 848 aaKnown RBP19.78■□□□□ 0.76
PTPRF-209ENST00000438120 SLC4A4Q9Y6R1 1079 aa19.78■□□□□ 0.76
PTPRF-209ENST00000438120 KIF20AO95235 890 aa19.78■□□□□ 0.76
PTPRF-209ENST00000438120 FANCAO15360 1455 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 KIF2AO00139 706 aaPredicted RBP19.77■□□□□ 0.76
PTPRF-209ENST00000438120 PICALMQ13492 652 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 WTAPQ15007 396 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 GIMAP6Q6P9H5 292 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 ZCRB1Q8TBF4 217 aaKnown RBP19.77■□□□□ 0.76
PTPRF-209ENST00000438120 CABLES1Q8TDN4 633 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 PUF60Q9UHX1 559 aaKnown RBP19.77■□□□□ 0.76
PTPRF-209ENST00000438120 MCM5P33992 734 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 MAP2K1Q02750 393 aaPredicted RBP19.77■□□□□ 0.76
PTPRF-209ENST00000438120 C16orf71Q8IYS4 520 aaPredicted RBP19.77■□□□□ 0.76
PTPRF-209ENST00000438120 C8orf58Q8NAV2 365 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 PA2G4Q9UQ80 394 aaKnown RBP19.77■□□□□ 0.76
PTPRF-209ENST00000438120 PRC1O43663 620 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 TSPY3P0CV98 308 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 TSPY8P0CW00 308 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 AFMP43652 599 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 ZNF165P49910 485 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 ST5P78524 1137 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 AMPD3Q01432 767 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 LMBR1LQ6UX01 489 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 LRRC59Q96AG4 307 aaKnown RBP19.77■□□□□ 0.76
PTPRF-209ENST00000438120 GBP3Q9H0R5 595 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 NSD2O96028 1365 aa19.77■□□□□ 0.76
PTPRF-209ENST00000438120 TMX3Q96JJ7 454 aa19.77■□□□□ 0.75
PTPRF-209ENST00000438120 PRDM10Q9NQV6 1147 aa19.77■□□□□ 0.75
PTPRF-209ENST00000438120 PAFAH1B1P43034 410 aa19.76■□□□□ 0.75
PTPRF-209ENST00000438120 CTNNA2P26232 953 aa19.76■□□□□ 0.75
PTPRF-209ENST00000438120 POLR3GO15318 223 aaPredicted RBP19.76■□□□□ 0.75
PTPRF-209ENST00000438120 MYO1BO43795 1136 aa19.76■□□□□ 0.75
PTPRF-209ENST00000438120 NOP2P46087 812 aaKnown RBP19.76■□□□□ 0.75
PTPRF-209ENST00000438120 NUCB1Q02818 461 aa19.76■□□□□ 0.75
PTPRF-209ENST00000438120 DENND4BO75064 1496 aaPredicted RBP19.76■□□□□ 0.75
PTPRF-209ENST00000438120 CCDC102BQ68D86 513 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 UQCRFS1P1P0C7P4 283 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 ZSWIM4Q9H7M6 989 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 HMG20BQ9P0W2 317 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 ATP2B3Q16720 1220 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 ANKRD36BQ8N2N9 1353 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 GRIN2AQ12879 1464 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 CADPS2Q86UW7 1296 aa19.75■□□□□ 0.75
PTPRF-209ENST00000438120 MAPK8IP2Q13387 824 aaPredicted RBP19.74■□□□□ 0.75
PTPRF-209ENST00000438120 PCDHB15Q9Y5E8 787 aa19.74■□□□□ 0.75
PTPRF-209ENST00000438120 SBNO2Q9Y2G9 1366 aa19.74■□□□□ 0.75
PTPRF-209ENST00000438120 HLTFQ14527 1009 aaKnown RBP eCLIP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms