RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SLX4Q8IY92 1834 aa19.56■□□□□ 0.72
LIMS3-201ENST00000437679 ALDH1B1P30837 517 aa19.56■□□□□ 0.72
LIMS3-201ENST00000437679 SOGA3Q5TF21 947 aa19.56■□□□□ 0.72
LIMS3-201ENST00000437679 PHAXQ9H814 394 aaKnown RBP19.56■□□□□ 0.72
LIMS3-201ENST00000437679 RNF181Q9P0P0 153 aa19.56■□□□□ 0.72
LIMS3-201ENST00000437679 ARFGEF2Q9Y6D5 1785 aa19.56■□□□□ 0.72
LIMS3-201ENST00000437679 RIC1Q4ADV7 1423 aa19.56■□□□□ 0.72
LIMS3-201ENST00000437679 SBF1O95248 1867 aa19.55■□□□□ 0.72
LIMS3-201ENST00000437679 RASSF7Q02833 373 aa19.55■□□□□ 0.72
LIMS3-201ENST00000437679 CRY2Q49AN0 593 aa19.55■□□□□ 0.72
LIMS3-201ENST00000437679 ZNF526Q8TF50 670 aaPredicted RBP19.55■□□□□ 0.72
LIMS3-201ENST00000437679 RPGRQ92834 1020 aaKnown RBP19.55■□□□□ 0.72
LIMS3-201ENST00000437679 MYH16Q9H6N6 1097 aa19.55■□□□□ 0.72
LIMS3-201ENST00000437679 GPBP1L1Q9HC44 474 aaPredicted RBP19.55■□□□□ 0.72
LIMS3-201ENST00000437679 TRMT112Q9UI30 125 aaKnown RBP19.55■□□□□ 0.72
LIMS3-201ENST00000437679 TNRC6CQ9HCJ0 1690 aaKnown RBP19.55■□□□□ 0.72
LIMS3-201ENST00000437679 DDX58O95786 925 aaKnown RBP19.54■□□□□ 0.72
LIMS3-201ENST00000437679 SLC10A5Q5PT55 438 aa19.54■□□□□ 0.72
LIMS3-201ENST00000437679 NLRP3Q96P20 1036 aa19.54■□□□□ 0.72
LIMS3-201ENST00000437679 ISCA1Q9BUE6 129 aa19.54■□□□□ 0.72
LIMS3-201ENST00000437679 ATP5J2-PTCD1G3V325 749 aa19.53■□□□□ 0.72
LIMS3-201ENST00000437679 LMNB1P20700 586 aa19.53■□□□□ 0.72
LIMS3-201ENST00000437679 SH3TC1Q8TE82 1336 aa19.52■□□□□ 0.72
LIMS3-201ENST00000437679 NFKBIEO00221 500 aa19.52■□□□□ 0.72
LIMS3-201ENST00000437679 TCERG1O14776 1098 aaKnown RBP19.52■□□□□ 0.72
LIMS3-201ENST00000437679 EXOSC9Q06265 439 aaKnown RBP19.52■□□□□ 0.72
LIMS3-201ENST00000437679 RBM17Q96I25 401 aaKnown RBP19.52■□□□□ 0.72
LIMS3-201ENST00000437679 CCDC93Q567U6 631 aa19.51■□□□□ 0.71
LIMS3-201ENST00000437679 SPINK5Q9NQ38 1064 aaPredicted RBP19.51■□□□□ 0.71
LIMS3-201ENST00000437679 FER1L6Q2WGJ9 1857 aa19.51■□□□□ 0.71
LIMS3-201ENST00000437679 CCDC88AQ3V6T2 1871 aa19.5■□□□□ 0.71
LIMS3-201ENST00000437679 SLC4A2P04920 1241 aa19.5■□□□□ 0.71
LIMS3-201ENST00000437679 HOXA10P31260 410 aaPredicted RBP19.5■□□□□ 0.71
LIMS3-201ENST00000437679 TRIM28Q13263 835 aaKnown RBP19.5■□□□□ 0.71
LIMS3-201ENST00000437679 DIEXFQ68CQ4 756 aaKnown RBP19.5■□□□□ 0.71
LIMS3-201ENST00000437679 C7orf43Q8WVR3 580 aa19.5■□□□□ 0.71
LIMS3-201ENST00000437679 MYD88Q99836 296 aa19.5■□□□□ 0.71
LIMS3-201ENST00000437679 TAOK3Q9H2K8 898 aa19.5■□□□□ 0.71
LIMS3-201ENST00000437679 VAMP4O75379 141 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 HCLS1P14317 486 aaPredicted RBP19.49■□□□□ 0.71
LIMS3-201ENST00000437679 C3orf67Q6ZVT6 689 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 SYNE4Q8N205 404 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 ZNF428Q96B54 188 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 CRAMP1Q96RY5 1269 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 CACNA1FO60840 1977 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 ZNF521Q96K83 1311 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 LTBP3Q9NS15 1303 aa19.49■□□□□ 0.71
LIMS3-201ENST00000437679 ZC3H4Q9UPT8 1303 aaKnown RBP19.49■□□□□ 0.71
LIMS3-201ENST00000437679 KSR2Q6VAB6 950 aa19.48■□□□□ 0.71
LIMS3-201ENST00000437679 RTKN2Q8IZC4 609 aa19.48■□□□□ 0.71
LIMS3-201ENST00000437679 METTL22Q9BUU2 404 aaPredicted RBP19.48■□□□□ 0.71
LIMS3-201ENST00000437679 MAP3K2Q9Y2U5 619 aa19.48■□□□□ 0.71
LIMS3-201ENST00000437679 PRELPP51888 382 aa19.47■□□□□ 0.71
LIMS3-201ENST00000437679 FAM89AQ96GI7 184 aa19.47■□□□□ 0.71
LIMS3-201ENST00000437679 PI4KAP2A4QPH2 592 aa19.46■□□□□ 0.71
LIMS3-201ENST00000437679 CC2D2BQ6DHV5 1058 aa19.46■□□□□ 0.71
LIMS3-201ENST00000437679 G2E3Q7L622 706 aa19.46■□□□□ 0.71
LIMS3-201ENST00000437679 PI4KAP1Q8N8J0 262 aa19.46■□□□□ 0.71
LIMS3-201ENST00000437679 CCDC191Q8NCU4 936 aa19.46■□□□□ 0.71
LIMS3-201ENST00000437679 KDM2BQ8NHM5 1336 aa19.46■□□□□ 0.71
LIMS3-201ENST00000437679 PPEF1O14829 653 aaPredicted RBP19.45■□□□□ 0.7
LIMS3-201ENST00000437679 FKBP4Q02790 459 aaKnown RBP eCLIP19.45■□□□□ 0.7
LIMS3-201ENST00000437679 NEXNQ0ZGT2 675 aa19.45■□□□□ 0.7
LIMS3-201ENST00000437679 RTL5Q5HYW3 569 aaPredicted RBP19.45■□□□□ 0.7
LIMS3-201ENST00000437679 OLFM4Q6UX06 510 aa19.45■□□□□ 0.7
LIMS3-201ENST00000437679 ZBTB38Q8NAP3 1195 aaPredicted RBP19.45■□□□□ 0.7
LIMS3-201ENST00000437679 TMX4Q9H1E5 349 aaPredicted RBP19.45■□□□□ 0.7
LIMS3-201ENST00000437679 CWC25Q9NXE8 425 aaPredicted RBP19.45■□□□□ 0.7
LIMS3-201ENST00000437679 LAMB2P55268 1798 aa19.44■□□□□ 0.7
LIMS3-201ENST00000437679 E9PSI1 815 aa19.44■□□□□ 0.7
LIMS3-201ENST00000437679 HSP90B1P14625 803 aaKnown RBP19.44■□□□□ 0.7
LIMS3-201ENST00000437679 FLIIQ13045 1269 aa19.44■□□□□ 0.7
LIMS3-201ENST00000437679 DDX46Q7L014 1031 aaKnown RBP19.44■□□□□ 0.7
LIMS3-201ENST00000437679 DICER1Q9UPY3 1922 aaKnown RBP19.44■□□□□ 0.7
LIMS3-201ENST00000437679 IRS4O14654 1257 aaPredicted RBP19.43■□□□□ 0.7
LIMS3-201ENST00000437679 C1QTNF8P60827 252 aa19.43■□□□□ 0.7
LIMS3-201ENST00000437679 FKBP5Q13451 457 aaPredicted RBP19.43■□□□□ 0.7
LIMS3-201ENST00000437679 GRIPAP1Q4V328 841 aa19.43■□□□□ 0.7
LIMS3-201ENST00000437679 ABCC4O15439 1325 aa19.43■□□□□ 0.7
LIMS3-201ENST00000437679 TIAM2Q8IVF5 1701 aa19.42■□□□□ 0.7
LIMS3-201ENST00000437679 DDX60Q8IY21 1712 aaKnown RBP19.42■□□□□ 0.7
LIMS3-201ENST00000437679 BBOX1O75936 387 aa19.42■□□□□ 0.7
LIMS3-201ENST00000437679 MIER1Q8N108 512 aa19.42■□□□□ 0.7
LIMS3-201ENST00000437679 PCCAP05165 728 aaPredicted RBP19.41■□□□□ 0.7
LIMS3-201ENST00000437679 SF3B3Q15393 1217 aaKnown RBP19.41■□□□□ 0.7
LIMS3-201ENST00000437679 NMRK2Q9NPI5 230 aa19.41■□□□□ 0.7
LIMS3-201ENST00000437679 ZNF277Q9NRM2 450 aaPredicted RBP19.41■□□□□ 0.7
LIMS3-201ENST00000437679 KIF3CO14782 793 aa19.4■□□□□ 0.7
LIMS3-201ENST00000437679 GRAPQ13588 217 aa19.4■□□□□ 0.7
LIMS3-201ENST00000437679 DPY19L2Q6NUT2 758 aa19.4■□□□□ 0.7
LIMS3-201ENST00000437679 GRAPLQ8TC17 118 aaPredicted RBP19.4■□□□□ 0.7
LIMS3-201ENST00000437679 PSMD1Q99460 953 aa19.4■□□□□ 0.7
LIMS3-201ENST00000437679 ATP6V0A2Q9Y487 856 aa19.4■□□□□ 0.7
LIMS3-201ENST00000437679 GLTPD2A6NH11 291 aa19.39■□□□□ 0.69
LIMS3-201ENST00000437679 IGKV5-2P06315 115 aa19.39■□□□□ 0.69
LIMS3-201ENST00000437679 SLFN5Q08AF3 891 aa19.39■□□□□ 0.69
LIMS3-201ENST00000437679 DNAAF4Q8WXU2 420 aa19.39■□□□□ 0.69
LIMS3-201ENST00000437679 NEURL1BA8MQ27 555 aa19.38■□□□□ 0.69
LIMS3-201ENST00000437679 IARSP41252 1262 aaKnown RBP19.38■□□□□ 0.69
LIMS3-201ENST00000437679 TMC4Q7Z404 712 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms