RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 SPATA31A6Q5VVP1 1343 aa8.65□□□□□ -1.02
COL28A1-202ENST00000430711 COL16A1Q07092 1604 aaPredicted RBP8.65□□□□□ -1.02
COL28A1-202ENST00000430711 A0A0G2JLW4 131 aa8.65□□□□□ -1.03
COL28A1-202ENST00000430711 RRP9O43818 475 aaKnown RBP8.65□□□□□ -1.03
COL28A1-202ENST00000430711 GJB2P29033 226 aa8.65□□□□□ -1.03
COL28A1-202ENST00000430711 ZNF530Q6P9A1 599 aaPredicted RBP8.65□□□□□ -1.03
COL28A1-202ENST00000430711 CDC37L1Q7L3B6 337 aa8.65□□□□□ -1.03
COL28A1-202ENST00000430711 ZNF589Q86UQ0 364 aaPredicted RBP8.65□□□□□ -1.03
COL28A1-202ENST00000430711 MTMR6Q9Y217 621 aa8.65□□□□□ -1.03
COL28A1-202ENST00000430711 ZBTB12Q9Y330 459 aaPredicted RBP8.65□□□□□ -1.03
COL28A1-202ENST00000430711 TBX22Q9Y458 520 aa8.65□□□□□ -1.03
COL28A1-202ENST00000430711 LMO7Q8WWI1 1683 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 A0A087WWV3 80 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.64□□□□□ -1.03
COL28A1-202ENST00000430711 STX6O43752 255 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 F13A1P00488 732 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 MCCP23508 829 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 HDGFP51858 240 aaKnown RBP8.64□□□□□ -1.03
COL28A1-202ENST00000430711 NMIQ13287 307 aaPredicted RBP8.64□□□□□ -1.03
COL28A1-202ENST00000430711 ORAI2Q96SN7 254 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 FUCA2Q9BTY2 467 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 ZMYND15Q9H091 742 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 USP54Q70EL1 1684 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 BTBD11A6QL63 1104 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 HTATSF1O43719 755 aaKnown RBP8.64□□□□□ -1.03
COL28A1-202ENST00000430711 MBD3O95983 291 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 KIF1BPQ96EK5 621 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 KCNF1Q9H3M0 494 aa8.64□□□□□ -1.03
COL28A1-202ENST00000430711 BICC1Q9H694 974 aaKnown RBP8.64□□□□□ -1.03
COL28A1-202ENST00000430711 ADCY5O95622 1261 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 LIG1P18858 919 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 OS9Q13438 667 aaPredicted RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 AACSQ86V21 672 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 ANP32BQ92688 251 aaKnown RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 PYCARDQ9ULZ3 195 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 CCDC9Q9Y3X0 531 aaKnown RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 EID1Q9Y6B2 187 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 AOX1Q06278 1338 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 WDR33Q9C0J8 1336 aaKnown RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 VPS37CA5D8V6 355 aaPredicted RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 IGKV5-2P06315 115 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 TPM2P07951 284 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 STK3Q13188 491 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 PDIA6Q15084 440 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 NECTIN1Q15223 517 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 CAMK4Q16566 473 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 CCDC129Q6ZRS4 1044 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 TTC6Q86TZ1 520 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 IP6K1Q92551 441 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 DDX17Q92841 729 aaKnown RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 SEC62Q99442 399 aaKnown RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 BOLA2Q9H3K6 86 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 PHF8Q9UPP1 1060 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 LIMCH1Q9UPQ0 1083 aa8.63□□□□□ -1.03
COL28A1-202ENST00000430711 RBM8AQ9Y5S9 174 aaKnown RBP8.63□□□□□ -1.03
COL28A1-202ENST00000430711 NHSL1Q5SYE7 1610 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 GIGYF1O75420 1035 aaPredicted RBP8.62□□□□□ -1.03
COL28A1-202ENST00000430711 MCM2P49736 904 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 PLCB2Q00722 1185 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.62□□□□□ -1.03
COL28A1-202ENST00000430711 ZNF710Q8N1W2 664 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 PROM2Q8N271 834 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 USP42Q9H9J4 1324 aaKnown RBP8.62□□□□□ -1.03
COL28A1-202ENST00000430711 RNMTO43148 476 aaKnown RBP8.62□□□□□ -1.03
COL28A1-202ENST00000430711 JAK2O60674 1132 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 MYL6BP14649 208 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 ESCO1Q5FWF5 840 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 CNTROBQ8N137 903 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 THEMISQ8N1K5 641 aaPredicted RBP8.62□□□□□ -1.03
COL28A1-202ENST00000430711 TMEM87AQ8NBN3 555 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 SPC24Q8NBT2 197 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 DDX11Q96FC9 970 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 LRRC2Q9BYS8 371 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 PDRG1Q9NUG6 133 aa8.62□□□□□ -1.03
COL28A1-202ENST00000430711 SIPA1L3O60292 1781 aaPredicted RBP8.61□□□□□ -1.03
COL28A1-202ENST00000430711 CCDC171Q6TFL3 1326 aa8.61□□□□□ -1.03
COL28A1-202ENST00000430711 RAB11FIP3O75154 756 aa8.61□□□□□ -1.03
COL28A1-202ENST00000430711 PTMAP06454 111 aaKnown RBP8.61□□□□□ -1.03
COL28A1-202ENST00000430711 FOSBP53539 338 aa8.61□□□□□ -1.03
COL28A1-202ENST00000430711 HS1BP3Q53T59 392 aa8.61□□□□□ -1.03
COL28A1-202ENST00000430711 CREB3L3Q68CJ9 461 aa8.61□□□□□ -1.03
COL28A1-202ENST00000430711 FTOQ9C0B1 505 aaKnown RBP eCLIP8.61□□□□□ -1.03
COL28A1-202ENST00000430711 BCL11BQ9C0K0 894 aaPredicted RBP8.61□□□□□ -1.03
COL28A1-202ENST00000430711 DIAPH3Q9NSV4 1193 aa8.61□□□□□ -1.03
COL28A1-202ENST00000430711 TFIP11Q9UBB9 837 aaKnown RBP8.61□□□□□ -1.03
COL28A1-202ENST00000430711 SMC3Q9UQE7 1217 aa8.61□□□□□ -1.03
COL28A1-202ENST00000430711 SLC27A2O14975 620 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 TEFQ10587 303 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 TOB2Q14106 344 aaPredicted RBP8.6□□□□□ -1.03
COL28A1-202ENST00000430711 LMOD2Q6P5Q4 547 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 CKAP2LQ8IYA6 745 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 ZSWIM6Q9HCJ5 1215 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 ECHDC1Q9NTX5 307 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 C9orf78Q9NZ63 289 aaPredicted RBP8.6□□□□□ -1.03
COL28A1-202ENST00000430711 USP16Q9Y5T5 823 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 CCDC183Q5T5S1 534 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 LARP1Q6PKG0 1096 aaKnown RBP8.6□□□□□ -1.03
COL28A1-202ENST00000430711 PRDM10Q9NQV6 1147 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 CCDC39Q9UFE4 941 aa8.6□□□□□ -1.03
COL28A1-202ENST00000430711 ANKARQ7Z5J8 1434 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms