RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 CCDC85AQ96PX6 553 aaPredicted RBP13.96□□□□□ -0.17
UBR4-207ENST00000425413 DNAJC2Q99543 621 aaKnown RBP13.96□□□□□ -0.17
UBR4-207ENST00000425413 MCM2P49736 904 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 EVI5LQ96CN4 794 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 CAMTA1Q9Y6Y1 1673 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 N4BP2Q86UW6 1770 aaPredicted RBP13.95□□□□□ -0.18
UBR4-207ENST00000425413 USP42Q9H9J4 1324 aaKnown RBP13.95□□□□□ -0.18
UBR4-207ENST00000425413 A0A0D9SFI3 127 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 MRE11P49959 708 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 PTPN12Q05209 780 aaKnown RBP13.95□□□□□ -0.18
UBR4-207ENST00000425413 C5P01031 1676 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 PCDH11XQ9BZA7 1347 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 PCDH11YQ9BZA8 1340 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 A0A0G2JS52 829 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 IL2RBP14784 551 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 FAM43AQ8N2R8 423 aa13.95□□□□□ -0.18
UBR4-207ENST00000425413 CUL4AQ13619 759 aa13.94□□□□□ -0.18
UBR4-207ENST00000425413 DBNLQ9UJU6 430 aaKnown RBP13.94□□□□□ -0.18
UBR4-207ENST00000425413 NSFL1CQ9UNZ2 370 aaKnown RBP13.94□□□□□ -0.18
UBR4-207ENST00000425413 LARGE1O95461 756 aa13.94□□□□□ -0.18
UBR4-207ENST00000425413 KLHL40Q2TBA0 621 aa13.94□□□□□ -0.18
UBR4-207ENST00000425413 RUFY3Q7L099 469 aa13.94□□□□□ -0.18
UBR4-207ENST00000425413 PLBD2Q8NHP8 589 aa13.94□□□□□ -0.18
UBR4-207ENST00000425413 NEUROD6Q96NK8 337 aa13.94□□□□□ -0.18
UBR4-207ENST00000425413 RBM8AQ9Y5S9 174 aaKnown RBP13.94□□□□□ -0.18
UBR4-207ENST00000425413 COL18A1P39060 1754 aa13.93□□□□□ -0.18
UBR4-207ENST00000425413 CPDO75976 1380 aa13.93□□□□□ -0.18
UBR4-207ENST00000425413 ZNF594Q96JF6 807 aaPredicted RBP13.93□□□□□ -0.18
UBR4-207ENST00000425413 DBNDD2Q9BQY9 259 aa13.93□□□□□ -0.18
UBR4-207ENST00000425413 TAF6LQ9Y6J9 622 aa13.93□□□□□ -0.18
UBR4-207ENST00000425413 SIPA1L3O60292 1781 aaPredicted RBP13.93□□□□□ -0.18
UBR4-207ENST00000425413 CLEC17AQ6ZS10 378 aa13.93□□□□□ -0.18
UBR4-207ENST00000425413 TUBGCP6Q96RT7 1819 aa13.93□□□□□ -0.18
UBR4-207ENST00000425413 ZNF589Q86UQ0 364 aaPredicted RBP13.92□□□□□ -0.18
UBR4-207ENST00000425413 GPT2Q8TD30 523 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 PTMSP20962 102 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 RFX5P48382 616 aaPredicted RBP13.92□□□□□ -0.18
UBR4-207ENST00000425413 SLFNL1Q499Z3 407 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 CCDC83Q8IWF9 413 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 RRAGDQ9NQL2 400 aaPredicted RBP13.92□□□□□ -0.18
UBR4-207ENST00000425413 CCDC171Q6TFL3 1326 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 SCN11AQ9UI33 1791 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 TNNI3KQ59H18 835 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 DDX46Q7L014 1031 aaKnown RBP13.92□□□□□ -0.18
UBR4-207ENST00000425413 NECAB1Q8N987 351 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 FPGT-TNNI3KV9GXZ4 949 aa13.92□□□□□ -0.18
UBR4-207ENST00000425413 SOS2Q07890 1332 aaPredicted RBP13.91□□□□□ -0.18
UBR4-207ENST00000425413 BRD1O95696 1058 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 CCDC129Q6ZRS4 1044 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 SYTL4Q96C24 671 aaPredicted RBP13.91□□□□□ -0.18
UBR4-207ENST00000425413 TTC14Q96N46 770 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 PDRG1Q9NUG6 133 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 ASAP1Q9ULH1 1129 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 KDM4FA0A1W2PPD8 638 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 TIMM10P62072 90 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 SEC62Q99442 399 aaKnown RBP13.91□□□□□ -0.18
UBR4-207ENST00000425413 COPRSQ9NQ92 184 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 BTG4Q9NY30 223 aa13.91□□□□□ -0.18
UBR4-207ENST00000425413 KAT6BQ8WYB5 2073 aa13.9□□□□□ -0.18
UBR4-207ENST00000425413 ZSCAN23Q3MJ62 389 aa13.9□□□□□ -0.18
UBR4-207ENST00000425413 CREB3L3Q68CJ9 461 aa13.9□□□□□ -0.18
UBR4-207ENST00000425413 CWC25Q9NXE8 425 aaPredicted RBP13.9□□□□□ -0.18
UBR4-207ENST00000425413 LIMCH1Q9UPQ0 1083 aa13.9□□□□□ -0.18
UBR4-207ENST00000425413 ZKSCAN1P17029 563 aaPredicted RBP13.9□□□□□ -0.18
UBR4-207ENST00000425413 CARD10Q9BWT7 1032 aa13.9□□□□□ -0.18
UBR4-207ENST00000425413 TMOD3Q9NYL9 352 aa13.9□□□□□ -0.18
UBR4-207ENST00000425413 CYP46A1Q9Y6A2 500 aa13.9□□□□□ -0.18
UBR4-207ENST00000425413 INTS4Q96HW7 963 aaKnown RBP13.89□□□□□ -0.19
UBR4-207ENST00000425413 COL5A2P05997 1499 aaPredicted RBP13.89□□□□□ -0.19
UBR4-207ENST00000425413 ERVV-2B6SEH9 535 aa13.89□□□□□ -0.19
UBR4-207ENST00000425413 CASP7P55210 303 aa13.89□□□□□ -0.19
UBR4-207ENST00000425413 LRRC24Q50LG9 513 aa13.89□□□□□ -0.19
UBR4-207ENST00000425413 ADAMTS7Q9UKP4 1686 aa13.89□□□□□ -0.19
UBR4-207ENST00000425413 FOXO4P98177 505 aa13.89□□□□□ -0.19
UBR4-207ENST00000425413 DNAJC10Q8IXB1 793 aa13.89□□□□□ -0.19
UBR4-207ENST00000425413 SMC3Q9UQE7 1217 aa13.89□□□□□ -0.19
UBR4-207ENST00000425413 SLC27A2O14975 620 aa13.88□□□□□ -0.19
UBR4-207ENST00000425413 NECTIN1Q15223 517 aa13.88□□□□□ -0.19
UBR4-207ENST00000425413 PUS3Q9BZE2 481 aaKnown RBP13.88□□□□□ -0.19
UBR4-207ENST00000425413 RABL6Q3YEC7 729 aaPredicted RBP13.88□□□□□ -0.19
UBR4-207ENST00000425413 SYNE4Q8N205 404 aa13.88□□□□□ -0.19
UBR4-207ENST00000425413 TMEM63CQ9P1W3 806 aa13.88□□□□□ -0.19
UBR4-207ENST00000425413 SYCE3A1L190 88 aa13.87□□□□□ -0.19
UBR4-207ENST00000425413 GADD45BO75293 160 aaPredicted RBP13.87□□□□□ -0.19
UBR4-207ENST00000425413 GPTP24298 496 aa13.87□□□□□ -0.19
UBR4-207ENST00000425413 STK3Q13188 491 aa13.87□□□□□ -0.19
UBR4-207ENST00000425413 H7C1W4 665 aa13.87□□□□□ -0.19
UBR4-207ENST00000425413 GOLIM4O00461 696 aa13.87□□□□□ -0.19
UBR4-207ENST00000425413 MAP4K1Q92918 833 aa13.87□□□□□ -0.19
UBR4-207ENST00000425413 FAM89AQ96GI7 184 aa13.87□□□□□ -0.19
UBR4-207ENST00000425413 SYT1P21579 422 aa13.86□□□□□ -0.19
UBR4-207ENST00000425413 NASPP49321 788 aaPredicted RBP13.86□□□□□ -0.19
UBR4-207ENST00000425413 PIGBQ92521 554 aa13.86□□□□□ -0.19
UBR4-207ENST00000425413 HIP1O00291 1037 aa13.86□□□□□ -0.19
UBR4-207ENST00000425413 PRIM1P49642 420 aaKnown RBP13.86□□□□□ -0.19
UBR4-207ENST00000425413 ME3Q16798 604 aa13.86□□□□□ -0.19
UBR4-207ENST00000425413 MRC1P22897 1456 aa13.86□□□□□ -0.19
UBR4-207ENST00000425413 WDR33Q9C0J8 1336 aaKnown RBP13.86□□□□□ -0.19
UBR4-207ENST00000425413 VPS37CA5D8V6 355 aaPredicted RBP13.86□□□□□ -0.19
UBR4-207ENST00000425413 EPB41L2O43491 1005 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms