RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 GPT2Q8TD30 523 aa14.42□□□□□ -0.1
PTPRN-204ENST00000423636 NCOA3Q9Y6Q9 1424 aa14.42□□□□□ -0.1
PTPRN-204ENST00000423636 CHST3Q7LGC8 479 aa14.41□□□□□ -0.1
PTPRN-204ENST00000423636 LSG1Q9H089 658 aaKnown RBP14.41□□□□□ -0.1
PTPRN-204ENST00000423636 BTG4Q9NY30 223 aa14.41□□□□□ -0.1
PTPRN-204ENST00000423636 NUTM2BA6NNL0 878 aaPredicted RBP14.41□□□□□ -0.1
PTPRN-204ENST00000423636 NUTM2EB1AL46 878 aaPredicted RBP14.41□□□□□ -0.1
PTPRN-204ENST00000423636 GLRX3O76003 335 aaKnown RBP14.41□□□□□ -0.1
PTPRN-204ENST00000423636 NUTM2AQ8IVF1 878 aaPredicted RBP14.41□□□□□ -0.1
PTPRN-204ENST00000423636 DCAF5Q96JK2 942 aa14.41□□□□□ -0.1
PTPRN-204ENST00000423636 SYCE3A1L190 88 aa14.41□□□□□ -0.1
PTPRN-204ENST00000423636 METTL22Q9BUU2 404 aaPredicted RBP14.41□□□□□ -0.1
PTPRN-204ENST00000423636 DBNLQ9UJU6 430 aaKnown RBP14.41□□□□□ -0.1
PTPRN-204ENST00000423636 RUFY3Q7L099 469 aa14.4□□□□□ -0.1
PTPRN-204ENST00000423636 ACSBG1Q96GR2 724 aa14.4□□□□□ -0.1
PTPRN-204ENST00000423636 BABAM1Q9NWV8 329 aa14.4□□□□□ -0.1
PTPRN-204ENST00000423636 SNAP23O00161 211 aa14.4□□□□□ -0.1
PTPRN-204ENST00000423636 RAB11FIP4Q86YS3 637 aa14.4□□□□□ -0.1
PTPRN-204ENST00000423636 LMBRD1Q9NUN5 540 aa14.4□□□□□ -0.1
PTPRN-204ENST00000423636 VPS37CA5D8V6 355 aaPredicted RBP14.4□□□□□ -0.11
PTPRN-204ENST00000423636 FIBPO43427 364 aa14.39□□□□□ -0.11
PTPRN-204ENST00000423636 DNAJC10Q8IXB1 793 aa14.39□□□□□ -0.11
PTPRN-204ENST00000423636 RBM8AQ9Y5S9 174 aaKnown RBP14.39□□□□□ -0.11
PTPRN-204ENST00000423636 ALDH1L1O75891 902 aa14.39□□□□□ -0.11
PTPRN-204ENST00000423636 HOXB7P09629 217 aa14.39□□□□□ -0.11
PTPRN-204ENST00000423636 HSPA4P34932 840 aa14.39□□□□□ -0.11
PTPRN-204ENST00000423636 PI16Q6UXB8 463 aa14.39□□□□□ -0.11
PTPRN-204ENST00000423636 PTPN12Q05209 780 aaKnown RBP14.38□□□□□ -0.11
PTPRN-204ENST00000423636 GOLIM4O00461 696 aa14.38□□□□□ -0.11
PTPRN-204ENST00000423636 STK11IPQ8N1F8 1099 aa14.38□□□□□ -0.11
PTPRN-204ENST00000423636 CIZ1Q9ULV3 898 aaPredicted RBP14.38□□□□□ -0.11
PTPRN-204ENST00000423636 CNPY2Q9Y2B0 182 aa14.38□□□□□ -0.11
PTPRN-204ENST00000423636 PRIM1P49642 420 aaKnown RBP14.38□□□□□ -0.11
PTPRN-204ENST00000423636 FKBP4Q02790 459 aaKnown RBP eCLIP14.38□□□□□ -0.11
PTPRN-204ENST00000423636 TBC1D2BQ9UPU7 963 aa14.38□□□□□ -0.11
PTPRN-204ENST00000423636 NUCB2P80303 420 aa14.37□□□□□ -0.11
PTPRN-204ENST00000423636 L1TD1Q5T7N2 865 aaKnown RBP14.37□□□□□ -0.11
PTPRN-204ENST00000423636 TMEM63CQ9P1W3 806 aa14.37□□□□□ -0.11
PTPRN-204ENST00000423636 PLCB2Q00722 1185 aa14.37□□□□□ -0.11
PTPRN-204ENST00000423636 VPS53Q5VIR6 699 aa14.37□□□□□ -0.11
PTPRN-204ENST00000423636 RAD50Q92878 1312 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 KDM4FA0A1W2PPD8 638 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 HSP90AB4PQ58FF6 505 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 HELBQ8NG08 1087 aaPredicted RBP14.36□□□□□ -0.11
PTPRN-204ENST00000423636 DDX11Q96FC9 970 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 ADAMTSL3P82987 1691 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 FSD2A1L4K1 749 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 ZSCAN23Q3MJ62 389 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 GPATCH3Q96I76 525 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 PDRG1Q9NUG6 133 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 LRRC37A3O60309 1634 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 PIP4K2BP78356 416 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 LRP10Q7Z4F1 713 aa14.36□□□□□ -0.11
PTPRN-204ENST00000423636 IL2RBP14784 551 aa14.35□□□□□ -0.11
PTPRN-204ENST00000423636 DNAJC5Q9H3Z4 198 aa14.35□□□□□ -0.11
PTPRN-204ENST00000423636 STRCP1A6NGW2 1772 aa14.35□□□□□ -0.11
PTPRN-204ENST00000423636 CEBPZQ03701 1054 aaKnown RBP14.35□□□□□ -0.11
PTPRN-204ENST00000423636 HLFQ16534 295 aa14.35□□□□□ -0.11
PTPRN-204ENST00000423636 TNNI3KQ59H18 835 aa14.35□□□□□ -0.11
PTPRN-204ENST00000423636 CREB3L3Q68CJ9 461 aa14.35□□□□□ -0.11
PTPRN-204ENST00000423636 FPGT-TNNI3KV9GXZ4 949 aa14.35□□□□□ -0.11
PTPRN-204ENST00000423636 HAND2P61296 217 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 ME3Q16798 604 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 RBSNQ9H1K0 784 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 TMOD3Q9NYL9 352 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 CYP2E1P05181 493 aaPredicted RBP14.34□□□□□ -0.11
PTPRN-204ENST00000423636 ADORA1P30542 326 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 FAM182BQ5T319 152 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 PIGBQ92521 554 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 SMC3Q9UQE7 1217 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 ERBB4Q15303 1308 aa14.34□□□□□ -0.11
PTPRN-204ENST00000423636 GJB2P29033 226 aa14.33□□□□□ -0.11
PTPRN-204ENST00000423636 USP48Q86UV5 1035 aa14.33□□□□□ -0.11
PTPRN-204ENST00000423636 TPCN1Q9ULQ1 816 aa14.33□□□□□ -0.11
PTPRN-204ENST00000423636 TNS3Q68CZ2 1445 aa14.33□□□□□ -0.12
PTPRN-204ENST00000423636 FGD1P98174 961 aa14.33□□□□□ -0.12
PTPRN-204ENST00000423636 EVI5LQ96CN4 794 aa14.33□□□□□ -0.12
PTPRN-204ENST00000423636 TFIP11Q9UBB9 837 aaKnown RBP14.33□□□□□ -0.12
PTPRN-204ENST00000423636 HEG1Q9ULI3 1381 aa14.33□□□□□ -0.12
PTPRN-204ENST00000423636 SYT1P21579 422 aa14.33□□□□□ -0.12
PTPRN-204ENST00000423636 TTLL5Q6EMB2 1281 aa14.33□□□□□ -0.12
PTPRN-204ENST00000423636 WDR17Q8IZU2 1322 aa14.32□□□□□ -0.12
PTPRN-204ENST00000423636 NASPP49321 788 aaPredicted RBP14.32□□□□□ -0.12
PTPRN-204ENST00000423636 MRE11P49959 708 aa14.32□□□□□ -0.12
PTPRN-204ENST00000423636 GORABQ5T7V8 394 aa14.32□□□□□ -0.12
PTPRN-204ENST00000423636 CCDC171Q6TFL3 1326 aa14.32□□□□□ -0.12
PTPRN-204ENST00000423636 SLC27A2O14975 620 aa14.32□□□□□ -0.12
PTPRN-204ENST00000423636 HSP90B1P14625 803 aaKnown RBP14.32□□□□□ -0.12
PTPRN-204ENST00000423636 DNM1Q05193 864 aaKnown RBP14.32□□□□□ -0.12
PTPRN-204ENST00000423636 TAF7LQ5H9L4 462 aa14.32□□□□□ -0.12
PTPRN-204ENST00000423636 RFX5P48382 616 aaPredicted RBP14.31□□□□□ -0.12
PTPRN-204ENST00000423636 MTX1Q13505 466 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 CCDC24Q8N4L8 307 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 GPHNQ9NQX3 736 aaPredicted RBP14.31□□□□□ -0.12
PTPRN-204ENST00000423636 TCHHQ07283 1943 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 CAMTA1Q9Y6Y1 1673 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 ERC1Q8IUD2 1116 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 PLBD2Q8NHP8 589 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 CYP46A1Q9Y6A2 500 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 JAK2O60674 1132 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms