RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GTPBP4Q9BZE4 634 aaKnown RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 STMN4Q9H169 189 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 MKRN1Q9UHC7 482 aaKnown RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 PDZRN3Q9UPQ7 1066 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 PLS1Q14651 629 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 KIF4BQ2VIQ3 1234 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 MFSD6Q6ZSS7 791 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 GABPB2Q8TAK5 448 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-204ENST00000423058 NYXQ9GZU5 481 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 MYD88Q99836 296 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 ANAPC4Q9UJX5 808 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 NBPF7P0C2Y1 421 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-204ENST00000423058 UBA7P41226 1012 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 PTPN14Q15678 1187 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 BRDTQ58F21 947 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-204ENST00000423058 TTC16Q8NEE8 873 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 VIMP08670 466 aaKnown RBP7.85□□□□□ -1.15
SCN1A-204ENST00000423058 BIRC2Q13490 618 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 DAAM2Q86T65 1068 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 ZNF219Q9P2Y4 722 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-204ENST00000423058 CIZ1Q9ULV3 898 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-204ENST00000423058 TNNT1P13805 278 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 TXNDC16Q9P2K2 825 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 CCDC61Q9Y6R9 512 aa7.85□□□□□ -1.15
SCN1A-204ENST00000423058 TSPY3P0CV98 308 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 TSPY8P0CW00 308 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 TNNI2P48788 182 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 SETDB2Q96T68 719 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 CWC25Q9NXE8 425 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-204ENST00000423058 LRRC9Q6ZRR7 1453 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 LPXNO60711 386 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 BMP15O95972 392 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 SMC1BQ8NDV3 1235 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 CASKIN1Q8WXD9 1431 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 GOLGA8BA8MQT2 603 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 CFAP70Q5T0N1 1121 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 NBPF6Q5VWK0 638 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 NBPF5PQ86XG9 351 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-204ENST00000423058 NBPF4Q96M43 638 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 CACYBPQ9HB71 228 aaKnown RBP7.84□□□□□ -1.15
SCN1A-204ENST00000423058 C6orf50Q9HD87 102 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 MRC2Q9UBG0 1479 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 GOLGA8AA7E2F4 631 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 GNAQP50148 359 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 SLC8A3P57103 927 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 GSDMDP57764 484 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 TMTC2Q8N394 836 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 CEP112Q8N8E3 955 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 JAKMIP2Q96AA8 810 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 UQCRHLA0A096LP55 91 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 KIF5AQ12840 1032 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 ZNF804AQ7Z570 1209 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 ATP2A2P16615 1042 aaKnown RBP7.84□□□□□ -1.15
SCN1A-204ENST00000423058 TMEM67Q5HYA8 995 aa7.84□□□□□ -1.15
SCN1A-204ENST00000423058 NSRP1Q9H0G5 558 aaKnown RBP7.84□□□□□ -1.15
SCN1A-204ENST00000423058 NEMFO60524 1076 aa7.84□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC183Q5T5S1 534 aa7.84□□□□□ -1.16
SCN1A-204ENST00000423058 JDP2Q8WYK2 163 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 MAK16Q9BXY0 300 aaKnown RBP7.83□□□□□ -1.16
SCN1A-204ENST00000423058 MSH6P52701 1360 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 TOM1O60784 492 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 PSMC4P43686 418 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 XPCQ01831 940 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-204ENST00000423058 DHX37Q8IY37 1157 aaKnown RBP7.83□□□□□ -1.16
SCN1A-204ENST00000423058 KRT23Q9C075 422 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 RRS1Q15050 365 aaKnown RBP7.83□□□□□ -1.16
SCN1A-204ENST00000423058 TNPO1Q92973 898 aaKnown RBP7.83□□□□□ -1.16
SCN1A-204ENST00000423058 NUDT16Q96DE0 195 aaKnown RBP7.83□□□□□ -1.16
SCN1A-204ENST00000423058 SPDYE3A6NKU9 549 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 PLCG2P16885 1265 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 CFAP58Q5T655 872 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 CUL7Q14999 1698 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 CTAGE1Q96RT6 745 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 VAT1LQ9HCJ6 419 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 CAMSAP2Q08AD1 1489 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 IFT140Q96RY7 1462 aa7.83□□□□□ -1.16
SCN1A-204ENST00000423058 UQCRFS1P1P0C7P4 283 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 DUSP27Q5VZP5 1158 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 CTR9Q6PD62 1173 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC77Q9BR77 488 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 CCT6BQ92526 530 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 BOLA2Q9H3K6 86 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 CNNM2Q9H8M5 875 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 AFAP1Q8N556 730 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 SMARCC1Q92922 1105 aaPredicted RBP7.82□□□□□ -1.16
SCN1A-204ENST00000423058 EVI5LQ96CN4 794 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 DBF4Q9UBU7 674 aaPredicted RBP7.82□□□□□ -1.16
SCN1A-204ENST00000423058 PTPRCP08575 1304 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 GOLGA1Q92805 767 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 TSR2Q969E8 191 aaKnown RBP7.82□□□□□ -1.16
SCN1A-204ENST00000423058 RAD54L2Q9Y4B4 1467 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 CEP128Q6ZU80 1094 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 LMBR1Q8WVP7 490 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 NOL3O60936 208 aaKnown RBP7.82□□□□□ -1.16
SCN1A-204ENST00000423058 HSF2BPO75031 334 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 MX1P20591 662 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 MXRA7P84157 204 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 IFIT1BQ5T764 474 aaKnown RBP7.82□□□□□ -1.16
SCN1A-204ENST00000423058 GSTA5Q7RTV2 222 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 HOOK2Q96ED9 719 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms