RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 NACADO15069 1562 aa6.84□□□□□ -1.31
HMGB3P20-201ENST00000417997 PIK3R2O00459 728 aa6.84□□□□□ -1.31
HMGB3P20-201ENST00000417997 FOXO3O43524 673 aa6.84□□□□□ -1.31
HMGB3P20-201ENST00000417997 STK32AQ8WU08 396 aa6.84□□□□□ -1.31
HMGB3P20-201ENST00000417997 SERPINA10Q9UK55 444 aa6.84□□□□□ -1.31
HMGB3P20-201ENST00000417997 MYO15BQ96JP2 1530 aa6.84□□□□□ -1.31
HMGB3P20-201ENST00000417997 ELOA3CA0A087WX78 387 aaPredicted RBP6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 ELOA3DA6NLF2 546 aaPredicted RBP6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 TGFBR3LH3BV60 316 aa6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 GNB5O14775 395 aa6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 SIN3BO75182 1162 aa6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 ELOA3BQ3SY89 546 aa6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 ELOA3Q8NG57 546 aa6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 PNMA5Q96PV4 448 aa6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 ZMIZ1Q9ULJ6 1067 aa6.83□□□□□ -1.32
HMGB3P20-201ENST00000417997 ACIN1Q9UKV3 1341 aaKnown RBP6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 SHROOM4Q9ULL8 1493 aa6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 DGKGP49619 791 aa6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 KCNQ4P56696 695 aa6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 LINC00114Q6XXX2 140 aa6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 C14orf37Q86TY3 774 aa6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 SUV39H2Q9H5I1 410 aa6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 QTRT2Q9H974 415 aaKnown RBP6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 BCS1LQ9Y276 419 aa6.82□□□□□ -1.32
HMGB3P20-201ENST00000417997 EPB42P16452 691 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 HOXB4P17483 251 aaPredicted RBP6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 ADH7P40394 386 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 IDH3AP50213 366 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 FKBP5Q13451 457 aaPredicted RBP6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 SWI5Q1ZZU3 235 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 IER5Q5VY09 327 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 PBXIP1Q96AQ6 731 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 MKNK1Q9BUB5 465 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 UBE2OQ9C0C9 1292 aaKnown RBP6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 RB1CC1Q8TDY2 1594 aa6.81□□□□□ -1.32
HMGB3P20-201ENST00000417997 ATG7O95352 703 aa6.8□□□□□ -1.32
HMGB3P20-201ENST00000417997 COL8A1P27658 744 aa6.8□□□□□ -1.32
HMGB3P20-201ENST00000417997 ELOAQ14241 798 aaKnown RBP6.8□□□□□ -1.32
HMGB3P20-201ENST00000417997 C11orf91Q3C1V1 193 aa6.8□□□□□ -1.32
HMGB3P20-201ENST00000417997 PLA2G4EQ3MJ16 856 aa6.8□□□□□ -1.32
HMGB3P20-201ENST00000417997 ADARB2-AS1A8MUL3 147 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 M0R082 166 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 MICAL2O94851 1124 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 NFKB1P19838 968 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 ARSDP51689 593 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 CCINQ13939 588 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 TMEM164Q5U3C3 297 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 KRT25Q7Z3Z0 450 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 ZNF417Q8TAU3 575 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 TNFRSF25Q93038 417 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 IFT43Q96FT9 208 aa6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 ZNF587Q96SQ5 575 aaPredicted RBP6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 NOP53Q9NZM5 478 aaKnown RBP6.79□□□□□ -1.32
HMGB3P20-201ENST00000417997 KRBA1A5PL33 1030 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 MSTNO14793 375 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 IGHA1P01876 353 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 SRPK2P78362 688 aaKnown RBP6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 CCDC82Q8N4S0 544 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 MYO19Q96H55 970 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 PLVAPQ9BX97 442 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 GSX2Q9BZM3 304 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 DMGDHQ9UI17 866 aaKnown RBP6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 SCRIBQ14160 1630 aa6.78□□□□□ -1.32
HMGB3P20-201ENST00000417997 ALBP02768 609 aa6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 INPP5BP32019 993 aa6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 FAM69CQ0P6D2 419 aa6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 NAA30Q147X3 362 aaPredicted RBP6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 OCLNQ16625 522 aa6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 COX20Q5RI15 118 aa6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 LRFN2Q9ULH4 789 aa6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 USP20Q9Y2K6 914 aa6.77□□□□□ -1.33
HMGB3P20-201ENST00000417997 C8orf86Q6ZUL3 223 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 ALYREFQ86V81 257 aaKnown RBP6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 TREML1Q86YW5 311 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 RGL4Q8IZJ4 473 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 TRIM11Q96F44 468 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 MDFIQ99750 246 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 SAP130Q9H0E3 1048 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 DNAJB12Q9NXW2 375 aaKnown RBP6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 CXXC1Q9P0U4 656 aaPredicted RBP6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 SLC6A14Q9UN76 642 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 STARD13Q9Y3M8 1113 aa6.76□□□□□ -1.33
HMGB3P20-201ENST00000417997 SASH3O75995 380 aa6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 C16orf46Q6P387 395 aa6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 CAPN12Q6ZSI9 719 aa6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 CMTR1Q8N1G2 835 aaKnown RBP6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 MICALL1Q8N3F8 863 aa6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 NUDT8Q8WV74 236 aa6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 SPOCK3Q9BQ16 436 aa6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 RTCBQ9Y3I0 505 aaKnown RBP6.75□□□□□ -1.33
HMGB3P20-201ENST00000417997 SPDYE3A6NKU9 549 aa6.74□□□□□ -1.33
HMGB3P20-201ENST00000417997 RARAP10276 462 aa6.74□□□□□ -1.33
HMGB3P20-201ENST00000417997 GRNP28799 593 aaKnown RBP6.74□□□□□ -1.33
HMGB3P20-201ENST00000417997 EFCC1Q9HA90 598 aa6.74□□□□□ -1.33
HMGB3P20-201ENST00000417997 FAM229AH3BQW9 127 aa6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 OPLAHO14841 1288 aa6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 LILRB5O75023 590 aa6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 XYLBO75191 536 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms