RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 MASTLQ96GX5 879 aa18.64■□□□□ 0.57
LIMS1-206ENST00000414829 MYD88Q99836 296 aa18.64■□□□□ 0.57
LIMS1-206ENST00000414829 SMC4Q9NTJ3 1288 aa18.64■□□□□ 0.57
LIMS1-206ENST00000414829 CWC25Q9NXE8 425 aaPredicted RBP18.64■□□□□ 0.57
LIMS1-206ENST00000414829 ADCY9O60503 1353 aa18.64■□□□□ 0.57
LIMS1-206ENST00000414829 KLRG2A4D1S0 409 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-206ENST00000414829 NPR1P16066 1061 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 CHRNA5P30532 468 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 NUTM1Q86Y26 1132 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 TTLL6Q8N841 843 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 BCS1LQ9Y276 419 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 KIF16BQ96L93 1317 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 ABCC12Q96J65 1359 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 NUP98P52948 1817 aa18.63■□□□□ 0.57
LIMS1-206ENST00000414829 AFDNP55196 1824 aaKnown RBP18.63■□□□□ 0.57
LIMS1-206ENST00000414829 ATP5J2-PTCD1G3V325 749 aa18.62■□□□□ 0.57
LIMS1-206ENST00000414829 SRGNP10124 158 aa18.62■□□□□ 0.57
LIMS1-206ENST00000414829 CRY2Q49AN0 593 aa18.62■□□□□ 0.57
LIMS1-206ENST00000414829 ERFEQ4G0M1 354 aa18.62■□□□□ 0.57
LIMS1-206ENST00000414829 G2E3Q7L622 706 aa18.62■□□□□ 0.57
LIMS1-206ENST00000414829 ZBTB38Q8NAP3 1195 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-206ENST00000414829 NLRP3Q96P20 1036 aa18.62■□□□□ 0.57
LIMS1-206ENST00000414829 ANKRD36CQ5JPF3 1778 aa18.62■□□□□ 0.57
LIMS1-206ENST00000414829 ARFGEF2Q9Y6D5 1785 aa18.61■□□□□ 0.57
LIMS1-206ENST00000414829 KCNA3P22001 575 aa18.61■□□□□ 0.57
LIMS1-206ENST00000414829 BRPF1P55201 1214 aaPredicted RBP18.61■□□□□ 0.57
LIMS1-206ENST00000414829 SLC10A5Q5PT55 438 aa18.61■□□□□ 0.57
LIMS1-206ENST00000414829 SOGA3Q5TF21 947 aa18.61■□□□□ 0.57
LIMS1-206ENST00000414829 LINS1Q8NG48 757 aa18.61■□□□□ 0.57
LIMS1-206ENST00000414829 SSH1Q8WYL5 1049 aa18.61■□□□□ 0.57
LIMS1-206ENST00000414829 RPGRQ92834 1020 aaKnown RBP18.61■□□□□ 0.57
LIMS1-206ENST00000414829 ZNF622Q969S3 477 aaKnown RBP eCLIP18.61■□□□□ 0.57
LIMS1-206ENST00000414829 PCCAP05165 728 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-206ENST00000414829 ALDH1B1P30837 517 aa18.6■□□□□ 0.57
LIMS1-206ENST00000414829 CCDC24Q8N4L8 307 aa18.6■□□□□ 0.57
LIMS1-206ENST00000414829 MRPL50Q8N5N7 158 aaKnown RBP18.6■□□□□ 0.57
LIMS1-206ENST00000414829 CACNA1FO60840 1977 aa18.59■□□□□ 0.57
LIMS1-206ENST00000414829 YBX3P16989 372 aaKnown RBP eCLIP18.59■□□□□ 0.57
LIMS1-206ENST00000414829 KIAA1551Q9HCM1 1747 aa18.59■□□□□ 0.57
LIMS1-206ENST00000414829 NEURL1BA8MQ27 555 aa18.58■□□□□ 0.56
LIMS1-206ENST00000414829 RBM17Q96I25 401 aaKnown RBP18.58■□□□□ 0.56
LIMS1-206ENST00000414829 RARSP54136 660 aaKnown RBP18.57■□□□□ 0.56
LIMS1-206ENST00000414829 CDHR2Q9BYE9 1310 aa18.56■□□□□ 0.56
LIMS1-206ENST00000414829 IRS4O14654 1257 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-206ENST00000414829 IPO8O15397 1037 aaKnown RBP18.56■□□□□ 0.56
LIMS1-206ENST00000414829 ALDH1L1O75891 902 aa18.56■□□□□ 0.56
LIMS1-206ENST00000414829 IGKV5-2P06315 115 aa18.56■□□□□ 0.56
LIMS1-206ENST00000414829 HOXA10P31260 410 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-206ENST00000414829 PRPF40BQ6NWY9 871 aaKnown RBP18.56■□□□□ 0.56
LIMS1-206ENST00000414829 FAM89AQ96GI7 184 aa18.56■□□□□ 0.56
LIMS1-206ENST00000414829 CRAMP1Q96RY5 1269 aa18.56■□□□□ 0.56
LIMS1-206ENST00000414829 BCL2L13Q9BXK5 485 aa18.56■□□□□ 0.56
LIMS1-206ENST00000414829 API5Q9BZZ5 524 aaKnown RBP18.56■□□□□ 0.56
LIMS1-206ENST00000414829 TMX4Q9H1E5 349 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-206ENST00000414829 DLEC1Q9Y238 1755 aa18.55■□□□□ 0.56
LIMS1-206ENST00000414829 GCKRQ14397 625 aa18.55■□□□□ 0.56
LIMS1-206ENST00000414829 GRIPAP1Q4V328 841 aa18.55■□□□□ 0.56
LIMS1-206ENST00000414829 SRCIN1Q9C0H9 1055 aa18.55■□□□□ 0.56
LIMS1-206ENST00000414829 WWC3Q9ULE0 1092 aa18.55■□□□□ 0.56
LIMS1-206ENST00000414829 ANKRD31Q8N7Z5 1873 aa18.54■□□□□ 0.56
LIMS1-206ENST00000414829 F6X3S4 739 aa18.54■□□□□ 0.56
LIMS1-206ENST00000414829 HCLS1P14317 486 aaPredicted RBP18.54■□□□□ 0.56
LIMS1-206ENST00000414829 CWF19L2Q2TBE0 894 aaKnown RBP18.54■□□□□ 0.56
LIMS1-206ENST00000414829 BEND3Q5T5X7 828 aa18.54■□□□□ 0.56
LIMS1-206ENST00000414829 CC2D2BQ6DHV5 1058 aa18.54■□□□□ 0.56
LIMS1-206ENST00000414829 SLC4A10Q6U841 1118 aa18.54■□□□□ 0.56
LIMS1-206ENST00000414829 DDX46Q7L014 1031 aaKnown RBP18.54■□□□□ 0.56
LIMS1-206ENST00000414829 TMC4Q7Z404 712 aa18.54■□□□□ 0.56
LIMS1-206ENST00000414829 ARHGAP45Q92619 1136 aa18.54■□□□□ 0.56
LIMS1-206ENST00000414829 N4BP2Q86UW6 1770 aaPredicted RBP18.54■□□□□ 0.56
LIMS1-206ENST00000414829 GOLGB1Q14789 3259 aaKnown RBP18.54■□□□□ 0.56
LIMS1-206ENST00000414829 PDE8AO60658 829 aa18.53■□□□□ 0.56
LIMS1-206ENST00000414829 SF3B3Q15393 1217 aaKnown RBP18.53■□□□□ 0.56
LIMS1-206ENST00000414829 CCDC152Q4G0S7 254 aa18.53■□□□□ 0.56
LIMS1-206ENST00000414829 COL11A2P13942 1736 aaPredicted RBP18.52■□□□□ 0.56
LIMS1-206ENST00000414829 CCDC93Q567U6 631 aa18.52■□□□□ 0.56
LIMS1-206ENST00000414829 BRCA1P38398 1863 aaKnown RBP18.52■□□□□ 0.55
LIMS1-206ENST00000414829 TNRC6CQ9HCJ0 1690 aaKnown RBP18.51■□□□□ 0.55
LIMS1-206ENST00000414829 CCT4P50991 539 aaKnown RBP18.51■□□□□ 0.55
LIMS1-206ENST00000414829 RTL5Q5HYW3 569 aaPredicted RBP18.51■□□□□ 0.55
LIMS1-206ENST00000414829 ARHGAP27Q6ZUM4 889 aa18.51■□□□□ 0.55
LIMS1-206ENST00000414829 UBE3BQ7Z3V4 1068 aa18.51■□□□□ 0.55
LIMS1-206ENST00000414829 H7C1W4 665 aa18.5■□□□□ 0.55
LIMS1-206ENST00000414829 GRM8O00222 908 aa18.5■□□□□ 0.55
LIMS1-206ENST00000414829 BBOX1O75936 387 aa18.5■□□□□ 0.55
LIMS1-206ENST00000414829 CTSWP56202 376 aa18.5■□□□□ 0.55
LIMS1-206ENST00000414829 RTKN2Q8IZC4 609 aa18.5■□□□□ 0.55
LIMS1-206ENST00000414829 PLA2G12BQ9BX93 195 aa18.5■□□□□ 0.55
LIMS1-206ENST00000414829 C9orf78Q9NZ63 289 aaPredicted RBP18.5■□□□□ 0.55
LIMS1-206ENST00000414829 NOB1Q9ULX3 412 aaKnown RBP18.5■□□□□ 0.55
LIMS1-206ENST00000414829 HDAC5Q9UQL6 1122 aa18.5■□□□□ 0.55
LIMS1-206ENST00000414829 PPEF1O14829 653 aaPredicted RBP18.49■□□□□ 0.55
LIMS1-206ENST00000414829 GRAPQ13588 217 aa18.49■□□□□ 0.55
LIMS1-206ENST00000414829 SYNE4Q8N205 404 aa18.49■□□□□ 0.55
LIMS1-206ENST00000414829 GRAPLQ8TC17 118 aaPredicted RBP18.49■□□□□ 0.55
LIMS1-206ENST00000414829 LTBP3Q9NS15 1303 aa18.49■□□□□ 0.55
LIMS1-206ENST00000414829 C21orf2O43822 256 aa18.48■□□□□ 0.55
LIMS1-206ENST00000414829 C3orf67Q6ZVT6 689 aa18.48■□□□□ 0.55
LIMS1-206ENST00000414829 CDC5LQ99459 802 aaKnown RBP18.48■□□□□ 0.55
LIMS1-206ENST00000414829 ARFGEF1Q9Y6D6 1849 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms