RNA–Protein interactions for RNA: ENST00000413642.7

VEGFA-207, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,197 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-207ENST00000413642 HYPKQ9NX55 129 aa34.08■■■■□ 3.05
VEGFA-207ENST00000413642 HSP90AB3PQ58FF7 597 aa34.07■■■■□ 3.04
VEGFA-207ENST00000413642 ANKRD13DQ6ZTN6 518 aa34.07■■■■□ 3.04
VEGFA-207ENST00000413642 SYNE4Q8N205 404 aa34.07■■■■□ 3.04
VEGFA-207ENST00000413642 PHAXQ9H814 394 aaKnown RBP34.07■■■■□ 3.04
VEGFA-207ENST00000413642 NCBP3Q53F19 620 aaKnown RBP34.03■■■■□ 3.04
VEGFA-207ENST00000413642 TAOK3Q9H2K8 898 aa34.03■■■■□ 3.04
VEGFA-207ENST00000413642 RIC1Q4ADV7 1423 aa34.03■■■■□ 3.04
VEGFA-207ENST00000413642 SBF1O95248 1867 aa34.02■■■■□ 3.04
VEGFA-207ENST00000413642 ATP5J2-PTCD1G3V325 749 aa34.02■■■■□ 3.04
VEGFA-207ENST00000413642 TCERG1O14776 1098 aaKnown RBP34.02■■■■□ 3.04
VEGFA-207ENST00000413642 ALDH1B1P30837 517 aa34.02■■■■□ 3.04
VEGFA-207ENST00000413642 SLC10A5Q5PT55 438 aa34.02■■■■□ 3.04
VEGFA-207ENST00000413642 RPGRQ92834 1020 aaKnown RBP34.02■■■■□ 3.04
VEGFA-207ENST00000413642 CCDC93Q567U6 631 aa34.01■■■■□ 3.03
VEGFA-207ENST00000413642 SOGA3Q5TF21 947 aa34.01■■■■□ 3.03
VEGFA-207ENST00000413642 SLC51AQ86UW1 340 aa34.01■■■■□ 3.03
VEGFA-207ENST00000413642 TRMT112Q9UI30 125 aaKnown RBP34.01■■■■□ 3.03
VEGFA-207ENST00000413642 IL16Q14005 1332 aa34.01■■■■□ 3.03
VEGFA-207ENST00000413642 HCLS1P14317 486 aaPredicted RBP34■■■■□ 3.03
VEGFA-207ENST00000413642 HOXA10P31260 410 aaPredicted RBP34■■■■□ 3.03
VEGFA-207ENST00000413642 ISCA1Q9BUE6 129 aa34■■■■□ 3.03
VEGFA-207ENST00000413642 LTBP3Q9NS15 1303 aa34■■■■□ 3.03
VEGFA-207ENST00000413642 NLRP3Q96P20 1036 aa33.99■■■■□ 3.03
VEGFA-207ENST00000413642 CCDC30Q5VVM6 783 aa33.98■■■■□ 3.03
VEGFA-207ENST00000413642 CACNA1SQ13698 1873 aa33.98■■■■□ 3.03
VEGFA-207ENST00000413642 RIC3Q7Z5B4 369 aa33.97■■■■□ 3.03
VEGFA-207ENST00000413642 KDM2BQ8NHM5 1336 aa33.97■■■■□ 3.03
VEGFA-207ENST00000413642 ARFGEF2Q9Y6D5 1785 aa33.96■■■■□ 3.03
VEGFA-207ENST00000413642 RBM17Q96I25 401 aaKnown RBP33.96■■■■□ 3.03
VEGFA-207ENST00000413642 RRAGCQ9HB90 399 aa33.96■■■■□ 3.03
VEGFA-207ENST00000413642 GOLGA2Q08379 1002 aa33.95■■■■□ 3.03
VEGFA-207ENST00000413642 TWISTNBQ3B726 338 aaPredicted RBP33.95■■■■□ 3.03
VEGFA-207ENST00000413642 WDR63Q8IWG1 891 aa33.95■■■■□ 3.03
VEGFA-207ENST00000413642 CRAMP1Q96RY5 1269 aa33.95■■■■□ 3.03
VEGFA-207ENST00000413642 SPINK5Q9NQ38 1064 aaPredicted RBP33.95■■■■□ 3.03
VEGFA-207ENST00000413642 SH3TC1Q8TE82 1336 aa33.95■■■■□ 3.03
VEGFA-207ENST00000413642 FANCIQ9NVI1 1328 aa33.95■■■■□ 3.03
VEGFA-207ENST00000413642 FER1L6Q2WGJ9 1857 aa33.95■■■■□ 3.02
VEGFA-207ENST00000413642 RNF123Q5XPI4 1314 aa33.94■■■■□ 3.02
VEGFA-207ENST00000413642 ZC3H4Q9UPT8 1303 aaKnown RBP33.94■■■■□ 3.02
VEGFA-207ENST00000413642 FKBP4Q02790 459 aaKnown RBP eCLIP33.93■■■■□ 3.02
VEGFA-207ENST00000413642 FAM89AQ96GI7 184 aa33.93■■■■□ 3.02
VEGFA-207ENST00000413642 ZNF277Q9NRM2 450 aaPredicted RBP33.93■■■■□ 3.02
VEGFA-207ENST00000413642 ANKRD36CQ5JPF3 1778 aa33.93■■■■□ 3.02
VEGFA-207ENST00000413642 GLTPD2A6NH11 291 aa33.92■■■■□ 3.02
VEGFA-207ENST00000413642 RTL5Q5HYW3 569 aaPredicted RBP33.92■■■■□ 3.02
VEGFA-207ENST00000413642 RTKN2Q8IZC4 609 aa33.91■■■■□ 3.02
VEGFA-207ENST00000413642 MYD88Q99836 296 aa33.91■■■■□ 3.02
VEGFA-207ENST00000413642 PPEF1O14829 653 aaPredicted RBP33.89■■■■□ 3.02
VEGFA-207ENST00000413642 G2E3Q7L622 706 aa33.89■■■■□ 3.02
VEGFA-207ENST00000413642 SNED1Q8TER0 1413 aa33.88■■■■□ 3.01
VEGFA-207ENST00000413642 ABCC4O15439 1325 aa33.88■■■■□ 3.01
VEGFA-207ENST00000413642 EXOSC9Q06265 439 aaKnown RBP33.88■■■■□ 3.01
VEGFA-207ENST00000413642 TRIM28Q13263 835 aaKnown RBP33.88■■■■□ 3.01
VEGFA-207ENST00000413642 CHMP4AQ9BY43 222 aa33.88■■■■□ 3.01
VEGFA-207ENST00000413642 TOMM70O94826 608 aa33.87■■■■□ 3.01
VEGFA-207ENST00000413642 STK31Q9BXU1 1019 aa33.87■■■■□ 3.01
VEGFA-207ENST00000413642 TIAM2Q8IVF5 1701 aa33.86■■■■□ 3.01
VEGFA-207ENST00000413642 CCDC88AQ3V6T2 1871 aa33.86■■■■□ 3.01
VEGFA-207ENST00000413642 MAP3K2Q9Y2U5 619 aa33.85■■■■□ 3.01
VEGFA-207ENST00000413642 VAMP4O75379 141 aa33.84■■■■□ 3.01
VEGFA-207ENST00000413642 DDX58O95786 925 aaKnown RBP33.84■■■■□ 3.01
VEGFA-207ENST00000413642 SLC4A2P04920 1241 aa33.84■■■■□ 3.01
VEGFA-207ENST00000413642 CC2D2BQ6DHV5 1058 aa33.84■■■■□ 3.01
VEGFA-207ENST00000413642 JARID2Q92833 1246 aaPredicted RBP33.84■■■■□ 3.01
VEGFA-207ENST00000413642 METTL22Q9BUU2 404 aaPredicted RBP33.84■■■■□ 3.01
VEGFA-207ENST00000413642 DPY19L2Q6NUT2 758 aa33.83■■■■□ 3.01
VEGFA-207ENST00000413642 PI4KAP2A4QPH2 592 aa33.82■■■■□ 3
VEGFA-207ENST00000413642 POTECB2RU33 542 aa33.82■■■■□ 3
VEGFA-207ENST00000413642 DDNO94850 711 aaPredicted RBP33.82■■■■□ 3
VEGFA-207ENST00000413642 IARSP41252 1262 aaKnown RBP33.82■■■■□ 3
VEGFA-207ENST00000413642 KSR2Q6VAB6 950 aa33.82■■■■□ 3
VEGFA-207ENST00000413642 C16orf71Q8IYS4 520 aaPredicted RBP33.82■■■■□ 3
VEGFA-207ENST00000413642 PI4KAP1Q8N8J0 262 aa33.82■■■■□ 3
VEGFA-207ENST00000413642 PSMD1Q99460 953 aa33.82■■■■□ 3
VEGFA-207ENST00000413642 IRS4O14654 1257 aaPredicted RBP33.81■■■■□ 3
VEGFA-207ENST00000413642 DDX46Q7L014 1031 aaKnown RBP33.81■■■■□ 3
VEGFA-207ENST00000413642 ATP6V0A2Q9Y487 856 aa33.81■■■■□ 3
VEGFA-207ENST00000413642 VEGFAP15692 232 aaPredicted RBP33.79■■■■□ 3
VEGFA-207ENST00000413642 ZBTB38Q8NAP3 1195 aaPredicted RBP33.79■■■■□ 3
VEGFA-207ENST00000413642 BBOX1O75936 387 aa33.78■■■■□ 3
VEGFA-207ENST00000413642 GRAPQ13588 217 aa33.78■■■■□ 3
VEGFA-207ENST00000413642 SF3B3Q15393 1217 aaKnown RBP33.78■■■■□ 3
VEGFA-207ENST00000413642 CCDC191Q8NCU4 936 aa33.78■■■■□ 3
VEGFA-207ENST00000413642 RBM46Q8TBY0 533 aaKnown RBP33.78■■■■□ 3
VEGFA-207ENST00000413642 GRAPLQ8TC17 118 aaPredicted RBP33.78■■■■□ 3
VEGFA-207ENST00000413642 ZNF521Q96K83 1311 aa33.78■■■■□ 3
VEGFA-207ENST00000413642 ZNF541Q9H0D2 1346 aa33.78■■■■□ 3
VEGFA-207ENST00000413642 IGKV5-2P06315 115 aa33.77■■■■□ 3
VEGFA-207ENST00000413642 HSPA6P17066 643 aa33.77■■■■□ 3
VEGFA-207ENST00000413642 MYH16Q9H6N6 1097 aa33.77■■■■□ 3
VEGFA-207ENST00000413642 CWC25Q9NXE8 425 aaPredicted RBP33.77■■■■□ 3
VEGFA-207ENST00000413642 LAMB2P55268 1798 aa33.77■■■■□ 3
VEGFA-207ENST00000413642 SP8Q8IXZ3 490 aa33.75■■■□□ 2.99
VEGFA-207ENST00000413642 CELF1Q92879 486 aaKnown RBP33.75■■■□□ 2.99
VEGFA-207ENST00000413642 DICER1Q9UPY3 1922 aaKnown RBP33.75■■■□□ 2.99
VEGFA-207ENST00000413642 DDX60Q8IY21 1712 aaKnown RBP33.74■■■□□ 2.99
VEGFA-207ENST00000413642 PCCAP05165 728 aaPredicted RBP33.74■■■□□ 2.99
VEGFA-207ENST00000413642 FLIIQ13045 1269 aa33.74■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms