RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SHTN1A0MZ66 631 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 UQCRHP07919 91 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 SMARCC2Q8TAQ2 1214 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 SERPINA10Q9UK55 444 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 TSPY3P0CV98 308 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 TSPY8P0CW00 308 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 TMPOP42166 694 aaKnown RBP8.26□□□□□ -1.09
UPF2-203ENST00000397053 CCT2P78371 535 aaKnown RBP8.26□□□□□ -1.09
UPF2-203ENST00000397053 DPH6Q7L8W6 267 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 SPATA24Q86W54 205 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 ACSBG1Q96GR2 724 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 MROH2BQ7Z745 1585 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 KIF2AO00139 706 aaPredicted RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 SH3BP5O60239 455 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 UQCRFS1P1P0C7P4 283 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 CEBPAP49715 358 aaPredicted RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 PICALMQ13492 652 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 FAM114A1Q8IWE2 563 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 PYM1Q9BRP8 204 aaKnown RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 IQCGQ9H095 443 aaKnown RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 SH2B1Q9NRF2 756 aaPredicted RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 URI1O94763 535 aaPredicted RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 CCDC144CPQ8IYA2 1237 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 AKR1B10O60218 316 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 KIAA0753Q2KHM9 967 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 FAM212AQ96EL1 285 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 GPHNQ9NQX3 736 aaPredicted RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 NSFL1CQ9UNZ2 370 aaKnown RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 AQRO60306 1485 aaKnown RBP eCLIP8.25□□□□□ -1.092e-6■□□□□ 10.6
UPF2-203ENST00000397053 HAND2P61296 217 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 DDB1Q16531 1140 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 IQSEC3Q9UPP2 1182 aaPredicted RBP8.25□□□□□ -1.09
UPF2-203ENST00000397053 MCM3P25205 808 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 ATP6V1AP38606 617 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 TBC1D5Q92609 795 aa8.25□□□□□ -1.09
UPF2-203ENST00000397053 BACH1O14867 736 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 BBXQ8WY36 941 aaPredicted RBP8.24□□□□□ -1.09
UPF2-203ENST00000397053 ORC3Q9UBD5 711 aaPredicted RBP8.24□□□□□ -1.09
UPF2-203ENST00000397053 F6X3S4 739 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 GNAQP50148 359 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 IVNS1ABPQ9Y6Y0 642 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 RAD54L2Q9Y4B4 1467 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 SNX16P57768 344 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 PTPN14Q15678 1187 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 C6orf163Q5TEZ5 329 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 TPTE2Q6XPS3 522 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 EP400NLQ6ZTU2 488 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 TMEM57Q8N5G2 664 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 DDX12PQ92771 950 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 SNRPA1P09661 255 aaKnown RBP8.24□□□□□ -1.09
UPF2-203ENST00000397053 CYP7A1P22680 504 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 TNNI2P48788 182 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 EYA3Q99504 573 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 GJA3Q9Y6H8 435 aa8.24□□□□□ -1.09
UPF2-203ENST00000397053 FGD6Q6ZV73 1430 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 LPXNO60711 386 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 NME9Q86XW9 330 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 FBF1Q8TES7 1133 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 TRIM47Q96LD4 638 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 SLC26A6Q9BXS9 759 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 ECHDC1Q9NTX5 307 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 SPDYE3A6NKU9 549 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 METAP2P50579 478 aaKnown RBP eCLIP8.23□□□□□ -1.09
UPF2-203ENST00000397053 PLCB3Q01970 1234 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 SP4Q02446 784 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 FSIP1Q8NA03 581 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 MRVI1Q9Y6F6 885 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 NCOA7Q8NI08 942 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 KIAA1524Q8TCG1 905 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 EXOC1Q9NV70 894 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 CIZ1Q9ULV3 898 aaPredicted RBP8.23□□□□□ -1.09
UPF2-203ENST00000397053 SMARCA5O60264 1052 aaPredicted RBP8.23□□□□□ -1.09
UPF2-203ENST00000397053 IFI16Q16666 785 aaKnown RBP8.23□□□□□ -1.09
UPF2-203ENST00000397053 ZNF804AQ7Z570 1209 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 ESR2Q92731 530 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 FANCIQ9NVI1 1328 aa8.23□□□□□ -1.09
UPF2-203ENST00000397053 NIP7Q9Y221 180 aaKnown RBP eCLIP8.23□□□□□ -1.09
UPF2-203ENST00000397053 RTCBQ9Y3I0 505 aaKnown RBP8.23□□□□□ -1.09
UPF2-203ENST00000397053 RBM10P98175 930 aaKnown RBP8.22□□□□□ -1.09
UPF2-203ENST00000397053 BMS1Q14692 1282 aaKnown RBP8.22□□□□□ -1.09
UPF2-203ENST00000397053 WTAPQ15007 396 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 NAA16Q6N069 864 aaPredicted RBP8.22□□□□□ -1.09
UPF2-203ENST00000397053 MSANTD4Q8NCY6 345 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 GIMAP7Q8NHV1 300 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 ERBINQ96RT1 1412 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 MSH6P52701 1360 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 BIN1O00499 593 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 CTAGE5O15320 804 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 ATP2B3Q16720 1220 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 CCDC14Q49A88 953 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 APBB1IPQ7Z5R6 666 aaPredicted RBP8.22□□□□□ -1.09
UPF2-203ENST00000397053 KIF18AQ8NI77 898 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 HAUS7Q99871 368 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 STK32BQ9NY57 414 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 UQCRHLA0A096LP55 91 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 SPECC1LQ69YQ0 1117 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 CEP83Q9Y592 693 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 GJC1P36383 396 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 CCDC102BQ68D86 513 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 KANK3Q6NY19 840 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms