RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 BCS1LQ9Y276 419 aa27.83■■■□□ 2.05
CLN3-207ENST00000395653 FLIIQ13045 1269 aa27.82■■■□□ 2.04
CLN3-207ENST00000395653 TRIM28Q13263 835 aaKnown RBP27.82■■■□□ 2.04
CLN3-207ENST00000395653 ERFEQ4G0M1 354 aa27.82■■■□□ 2.04
CLN3-207ENST00000395653 DALRD3Q5D0E6 543 aaKnown RBP27.82■■■□□ 2.04
CLN3-207ENST00000395653 KSR2Q6VAB6 950 aa27.82■■■□□ 2.04
CLN3-207ENST00000395653 ADCY9O60503 1353 aa27.79■■■□□ 2.04
CLN3-207ENST00000395653 PI4KAP2A4QPH2 592 aa27.79■■■□□ 2.04
CLN3-207ENST00000395653 ATP5J2-PTCD1G3V325 749 aa27.79■■■□□ 2.04
CLN3-207ENST00000395653 SRGNP10124 158 aa27.79■■■□□ 2.04
CLN3-207ENST00000395653 PI4KAP1Q8N8J0 262 aa27.79■■■□□ 2.04
CLN3-207ENST00000395653 ZNF428Q96B54 188 aa27.79■■■□□ 2.04
CLN3-207ENST00000395653 METTL22Q9BUU2 404 aaPredicted RBP27.79■■■□□ 2.04
CLN3-207ENST00000395653 MAP3K2Q9Y2U5 619 aa27.79■■■□□ 2.04
CLN3-207ENST00000395653 TNRC6CQ9HCJ0 1690 aaKnown RBP27.79■■■□□ 2.04
CLN3-207ENST00000395653 TTLL6Q8N841 843 aa27.78■■■□□ 2.04
CLN3-207ENST00000395653 MYD88Q99836 296 aa27.78■■■□□ 2.04
CLN3-207ENST00000395653 ARFGEF1Q9Y6D6 1849 aa27.78■■■□□ 2.04
CLN3-207ENST00000395653 STYK1Q6J9G0 422 aa27.77■■■□□ 2.04
CLN3-207ENST00000395653 MASTLQ96GX5 879 aa27.77■■■□□ 2.04
CLN3-207ENST00000395653 TRMT112Q9UI30 125 aaKnown RBP27.77■■■□□ 2.04
CLN3-207ENST00000395653 CT47B1P0C2W7 299 aaPredicted RBP27.76■■■□□ 2.04
CLN3-207ENST00000395653 FKBP5Q13451 457 aaPredicted RBP27.76■■■□□ 2.04
CLN3-207ENST00000395653 SLC10A5Q5PT55 438 aa27.76■■■□□ 2.04
CLN3-207ENST00000395653 SH3TC1Q8TE82 1336 aa27.76■■■□□ 2.03
CLN3-207ENST00000395653 ZNF622Q969S3 477 aaKnown RBP eCLIP27.75■■■□□ 2.03
CLN3-207ENST00000395653 ZBED9Q6R2W3 1325 aa27.75■■■□□ 2.03
CLN3-207ENST00000395653 NPR1P16066 1061 aa27.75■■■□□ 2.03
CLN3-207ENST00000395653 CRY2Q49AN0 593 aa27.75■■■□□ 2.03
CLN3-207ENST00000395653 CCDC191Q8NCU4 936 aa27.75■■■□□ 2.03
CLN3-207ENST00000395653 NEXNQ0ZGT2 675 aa27.74■■■□□ 2.03
CLN3-207ENST00000395653 CNKSR1Q969H4 720 aa27.74■■■□□ 2.03
CLN3-207ENST00000395653 CHD4Q14839 1912 aa27.71■■■□□ 2.03
CLN3-207ENST00000395653 ALDH1L2Q3SY69 923 aa27.71■■■□□ 2.03
CLN3-207ENST00000395653 DNAAF4Q8WXU2 420 aa27.71■■■□□ 2.03
CLN3-207ENST00000395653 NLRP3Q96P20 1036 aa27.71■■■□□ 2.03
CLN3-207ENST00000395653 CWC25Q9NXE8 425 aaPredicted RBP27.71■■■□□ 2.03
CLN3-207ENST00000395653 IGKV5-2P06315 115 aa27.7■■■□□ 2.03
CLN3-207ENST00000395653 SYNE4Q8N205 404 aa27.7■■■□□ 2.03
CLN3-207ENST00000395653 MRPL50Q8N5N7 158 aaKnown RBP27.7■■■□□ 2.03
CLN3-207ENST00000395653 SSH1Q8WYL5 1049 aa27.7■■■□□ 2.03
CLN3-207ENST00000395653 ZBTB38Q8NAP3 1195 aaPredicted RBP27.69■■■□□ 2.02
CLN3-207ENST00000395653 FAM89AQ96GI7 184 aa27.69■■■□□ 2.02
CLN3-207ENST00000395653 HCLS1P14317 486 aaPredicted RBP27.68■■■□□ 2.02
CLN3-207ENST00000395653 ALDH1B1P30837 517 aa27.68■■■□□ 2.02
CLN3-207ENST00000395653 PRPF40BQ6NWY9 871 aaKnown RBP27.68■■■□□ 2.02
CLN3-207ENST00000395653 HOXA10P31260 410 aaPredicted RBP27.67■■■□□ 2.02
CLN3-207ENST00000395653 C3orf67Q6ZVT6 689 aa27.67■■■□□ 2.02
CLN3-207ENST00000395653 RPGRQ92834 1020 aaKnown RBP27.67■■■□□ 2.02
CLN3-207ENST00000395653 DDX60Q8IY21 1712 aaKnown RBP27.67■■■□□ 2.02
CLN3-207ENST00000395653 NEURL1BA8MQ27 555 aa27.67■■■□□ 2.02
CLN3-207ENST00000395653 PCCAP05165 728 aaPredicted RBP27.67■■■□□ 2.02
CLN3-207ENST00000395653 ARHGAP27Q6ZUM4 889 aa27.67■■■□□ 2.02
CLN3-207ENST00000395653 CWF19L2Q2TBE0 894 aaKnown RBP27.66■■■□□ 2.02
CLN3-207ENST00000395653 LINS1Q8NG48 757 aa27.66■■■□□ 2.02
CLN3-207ENST00000395653 LAMB2P55268 1798 aa27.66■■■□□ 2.02
CLN3-207ENST00000395653 SLX4Q8IY92 1834 aa27.65■■■□□ 2.02
CLN3-207ENST00000395653 F6X3S4 739 aa27.65■■■□□ 2.02
CLN3-207ENST00000395653 HSP90B1P14625 803 aaKnown RBP27.65■■■□□ 2.02
CLN3-207ENST00000395653 YY1P25490 414 aa27.65■■■□□ 2.02
CLN3-207ENST00000395653 RBM17Q96I25 401 aaKnown RBP27.65■■■□□ 2.02
CLN3-207ENST00000395653 CACNA1SQ13698 1873 aa27.65■■■□□ 2.02
CLN3-207ENST00000395653 PTPRCP08575 1304 aa27.65■■■□□ 2.02
CLN3-207ENST00000395653 IRS4O14654 1257 aaPredicted RBP27.64■■■□□ 2.02
CLN3-207ENST00000395653 RTL5Q5HYW3 569 aaPredicted RBP27.64■■■□□ 2.02
CLN3-207ENST00000395653 CRAMP1Q96RY5 1269 aa27.64■■■□□ 2.02
CLN3-207ENST00000395653 SMC4Q9NTJ3 1288 aa27.64■■■□□ 2.02
CLN3-207ENST00000395653 C21orf2O43822 256 aa27.63■■■□□ 2.01
CLN3-207ENST00000395653 BCL2L13Q9BXK5 485 aa27.63■■■□□ 2.01
CLN3-207ENST00000395653 SOGA3Q5TF21 947 aa27.62■■■□□ 2.01
CLN3-207ENST00000395653 CDHR2Q9BYE9 1310 aa27.62■■■□□ 2.01
CLN3-207ENST00000395653 BRPF1P55201 1214 aaPredicted RBP27.61■■■□□ 2.01
CLN3-207ENST00000395653 BEND3Q5T5X7 828 aa27.61■■■□□ 2.01
CLN3-207ENST00000395653 C7orf43Q8WVR3 580 aa27.61■■■□□ 2.01
CLN3-207ENST00000395653 RARSP54136 660 aaKnown RBP27.6■■■□□ 2.01
CLN3-207ENST00000395653 GCKRQ14397 625 aa27.6■■■□□ 2.01
CLN3-207ENST00000395653 SF3B3Q15393 1217 aaKnown RBP27.6■■■□□ 2.01
CLN3-207ENST00000395653 ZNF219Q9P2Y4 722 aaPredicted RBP27.59■■■□□ 2.01
CLN3-207ENST00000395653 ABCC4O15439 1325 aa27.58■■■□□ 2.01
CLN3-207ENST00000395653 H7C1W4 665 aa27.58■■■□□ 2
CLN3-207ENST00000395653 DDX46Q7L014 1031 aaKnown RBP27.58■■■□□ 2
CLN3-207ENST00000395653 JARID2Q92833 1246 aaPredicted RBP27.58■■■□□ 2
CLN3-207ENST00000395653 PDE8AO60658 829 aa27.57■■■□□ 2
CLN3-207ENST00000395653 CCDC93Q567U6 631 aa27.57■■■□□ 2
CLN3-207ENST00000395653 FER1L6Q2WGJ9 1857 aa27.56■■■□□ 2
CLN3-207ENST00000395653 NFKBIEO00221 500 aa27.56■■■□□ 2
CLN3-207ENST00000395653 ALDH1L1O75891 902 aa27.56■■■□□ 2
CLN3-207ENST00000395653 SLC4A10Q6U841 1118 aa27.56■■■□□ 2
CLN3-207ENST00000395653 UBE3BQ7Z3V4 1068 aa27.56■■■□□ 2
CLN3-207ENST00000395653 SRCIN1Q9C0H9 1055 aa27.55■■■□□ 2
CLN3-207ENST00000395653 LTBP3Q9NS15 1303 aa27.54■■■□□ 2
CLN3-207ENST00000395653 PPEF1O14829 653 aaPredicted RBP27.54■■■□□ 2
CLN3-207ENST00000395653 RASSF7Q02833 373 aa27.54■■■□□ 2
CLN3-207ENST00000395653 GRAPQ13588 217 aa27.54■■■□□ 2
CLN3-207ENST00000395653 CC2D2BQ6DHV5 1058 aa27.54■■■□□ 2
CLN3-207ENST00000395653 GRAPLQ8TC17 118 aaPredicted RBP27.54■■■□□ 2
CLN3-207ENST00000395653 KIF16BQ96L93 1317 aa27.53■■■□□ 2
CLN3-207ENST00000395653 BBOX1O75936 387 aa27.53■■■□□ 2
CLN3-207ENST00000395653 CASP7P55210 303 aa27.53■■■□□ 2
CLN3-207ENST00000395653 TAOK3Q9H2K8 898 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms