RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SELENOOQ9BVL4 669 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 NECAB1Q8N987 351 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 CCDC8Q9H0W5 538 aaPredicted RBP13.55□□□□□ -0.24
SYNPO-202ENST00000394243 FCHSD2O94868 740 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 APBB1IPQ7Z5R6 666 aaPredicted RBP13.55□□□□□ -0.24
SYNPO-202ENST00000394243 LZTFL1Q9NQ48 299 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 GOLGA8AA7E2F4 631 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 TRIM27P14373 513 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 FERP16591 822 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 TUBB4BP68371 445 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 GPRASP1Q5JY77 1395 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 DHX29Q7Z478 1369 aaKnown RBP13.55□□□□□ -0.24
SYNPO-202ENST00000394243 ZNF213O14771 459 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 LACTBP83111 547 aaPredicted RBP13.55□□□□□ -0.24
SYNPO-202ENST00000394243 ZNF569Q5MCW4 686 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 MIPOL1Q8TD10 442 aa13.55□□□□□ -0.24
SYNPO-202ENST00000394243 EVCP57679 992 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 RAB3GAP1Q15042 981 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 B4GALNT4Q76KP1 1039 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 CCDC144CPQ8IYA2 1237 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 ERO1AQ96HE7 468 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 TRIM47Q96LD4 638 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 CCDC85AQ96PX6 553 aaPredicted RBP13.54□□□□□ -0.24
SYNPO-202ENST00000394243 CTAGE1Q96RT6 745 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 SMC6Q96SB8 1091 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 STMN4Q9H169 189 aaPredicted RBP13.54□□□□□ -0.24
SYNPO-202ENST00000394243 SMIM23A6NLE4 172 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 ZFYP08048 801 aaPredicted RBP13.54□□□□□ -0.24
SYNPO-202ENST00000394243 LMOD1P29536 600 aaPredicted RBP13.54□□□□□ -0.24
SYNPO-202ENST00000394243 NLRP5P59047 1200 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 DNM1Q05193 864 aaKnown RBP13.54□□□□□ -0.24
SYNPO-202ENST00000394243 TTC22Q5TAA0 569 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 AFAP1L1Q8TED9 768 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 IFT81Q8WYA0 676 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 PRDM2Q13029 1718 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 TACC1O75410 805 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 USP16Q9Y5T5 823 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 INPP5BP32019 993 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 DUSP27Q5VZP5 1158 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 RAB34Q9BZG1 259 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 NAPBQ9H115 298 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 GOLIM4O00461 696 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 SAMD15Q9P1V8 674 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 STIM2Q9P246 746 aa13.54□□□□□ -0.24
SYNPO-202ENST00000394243 BTBD11A6QL63 1104 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 PPP2R3AQ06190 1150 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 TMEM266Q2M3C6 531 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 TTC14Q96N46 770 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 PCK1P35558 622 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 C8orf34Q49A92 452 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 TSHZ3Q63HK5 1081 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 MYRIPQ8NFW9 859 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 PRAM1Q96QH2 718 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 ORC3Q9UBD5 711 aaPredicted RBP13.53□□□□□ -0.24
SYNPO-202ENST00000394243 IQCGQ9H095 443 aaKnown RBP13.53□□□□□ -0.24
SYNPO-202ENST00000394243 PRC1O43663 620 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 IFIT1P09914 478 aaKnown RBP13.53□□□□□ -0.24
SYNPO-202ENST00000394243 IDEP14735 1019 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 SNX21Q969T3 373 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 BUB1BO60566 1050 aaPredicted RBP13.53□□□□□ -0.24
SYNPO-202ENST00000394243 ZNF530Q6P9A1 599 aaPredicted RBP13.53□□□□□ -0.24
SYNPO-202ENST00000394243 ARFGAP2Q8N6H7 521 aa13.53□□□□□ -0.24
SYNPO-202ENST00000394243 IFIT3O14879 490 aaKnown RBP13.52□□□□□ -0.24
SYNPO-202ENST00000394243 CTCFLQ8NI51 663 aaPredicted RBP13.52□□□□□ -0.24
SYNPO-202ENST00000394243 CABP1Q9NZU7 370 aa13.52□□□□□ -0.24
SYNPO-202ENST00000394243 ABCF2Q9UG63 623 aa13.52□□□□□ -0.24
SYNPO-202ENST00000394243 RASAL2Q9UJF2 1139 aa13.52□□□□□ -0.24
SYNPO-202ENST00000394243 AMPD3Q01432 767 aa13.52□□□□□ -0.24
SYNPO-202ENST00000394243 FEZ2Q9UHY8 353 aaPredicted RBP13.52□□□□□ -0.24
SYNPO-202ENST00000394243 CCDC194A0A1B0GVG4 234 aa13.52□□□□□ -0.24
SYNPO-202ENST00000394243 AFMP43652 599 aa13.52□□□□□ -0.24
SYNPO-202ENST00000394243 GUCA1BQ9UMX6 200 aa13.52□□□□□ -0.24
SYNPO-202ENST00000394243 RRAGBQ5VZM2 374 aa13.52□□□□□ -0.25
SYNPO-202ENST00000394243 NCOA2Q15596 1464 aa13.52□□□□□ -0.25
SYNPO-202ENST00000394243 F6X3S4 739 aa13.52□□□□□ -0.25
SYNPO-202ENST00000394243 NOL3O60936 208 aaKnown RBP13.52□□□□□ -0.25
SYNPO-202ENST00000394243 CABP4P57796 275 aa13.52□□□□□ -0.25
SYNPO-202ENST00000394243 ATP11AP98196 1134 aa13.52□□□□□ -0.25
SYNPO-202ENST00000394243 RAB11FIP4Q86YS3 637 aa13.52□□□□□ -0.25
SYNPO-202ENST00000394243 RRS1Q15050 365 aaKnown RBP13.51□□□□□ -0.25
SYNPO-202ENST00000394243 POTEDQ86YR6 584 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 DDX12PQ92771 950 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 TLDC2A0PJX2 215 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 PPFIBP2Q8ND30 876 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 EVI5LQ96CN4 794 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 CALML4Q96GE6 196 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 NEK1Q96PY6 1258 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 CDK19Q9BWU1 502 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 KRT13P13646 458 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 MAP2K2P36507 400 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 IARSP41252 1262 aaKnown RBP13.51□□□□□ -0.25
SYNPO-202ENST00000394243 PPP1R12CQ9BZL4 782 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 IFNKQ9P0W0 207 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 NDUFAB1O14561 156 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 F13A1P00488 732 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 LMNTD2Q8IXW0 634 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 RBSNQ9H1K0 784 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 KRT86O43790 486 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 VAV2P52735 878 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 CETN1Q12798 172 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms