RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 SLU7O95391 586 aaKnown RBP17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 CAMK4Q16566 473 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 ZNF335Q9H4Z2 1342 aaPredicted RBP17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 STRCP1A6NGW2 1772 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 EPB41L2O43491 1005 aaKnown RBP17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 RUFY3Q7L099 469 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 RILPL2Q969X0 211 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 LIMCH1Q9UPQ0 1083 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 RNF20Q5VTR2 975 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 LRRC8AQ8IWT6 810 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 EFCC1Q9HA90 598 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 NRKQ7Z2Y5 1582 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 LIG1P18858 919 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 AK2P54819 239 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 LMOD3Q0VAK6 560 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 GTF3C6Q969F1 213 aa17.33■□□□□ 0.36
VPS9D1-201ENST00000389386 FMN2Q9NZ56 1722 aa17.32■□□□□ 0.36
VPS9D1-201ENST00000389386 CDC25BP30305 580 aa17.32■□□□□ 0.36
VPS9D1-201ENST00000389386 DDX17Q92841 729 aaKnown RBP17.32■□□□□ 0.36
VPS9D1-201ENST00000389386 LARP6Q9BRS8 491 aaKnown RBP17.32■□□□□ 0.36
VPS9D1-201ENST00000389386 IL25Q9H293 177 aa17.32■□□□□ 0.36
VPS9D1-201ENST00000389386 STRCQ7RTU9 1775 aa17.32■□□□□ 0.36
VPS9D1-201ENST00000389386 CKAP2LQ8IYA6 745 aa17.32■□□□□ 0.36
VPS9D1-201ENST00000389386 PTPRCP08575 1304 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 NEMFO60524 1076 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 PLA2G4AP47712 749 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 PSME1Q06323 249 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 LMOD2Q6P5Q4 547 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 TTC6Q86TZ1 520 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 ABTB2Q8N961 1025 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 C19orf44Q9H6X5 657 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 CHMP3Q9Y3E7 222 aa17.31■□□□□ 0.36
VPS9D1-201ENST00000389386 ARID5BQ14865 1188 aa17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 MTHFSDQ2M296 383 aaKnown RBP17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 UNC5CLQ8IV45 518 aa17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 EYA1Q99502 592 aa17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 SNX14Q9Y5W7 946 aa17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 NPHP1O15259 732 aa17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 MUM1L1Q5H9M0 696 aa17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 TNMDQ9H2S6 317 aa17.3■□□□□ 0.36
VPS9D1-201ENST00000389386 PNMA6AP0CW24 399 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 GJB2P29033 226 aa17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 RBM43Q6ZSC3 357 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 NFATC2IPQ8NCF5 419 aa17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 EXOC6BQ9Y2D4 811 aa17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 SKILP12757 684 aa17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 STAP2Q9UGK3 403 aa17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 ANKARQ7Z5J8 1434 aa17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 USP31Q70CQ4 1352 aa17.29■□□□□ 0.36
VPS9D1-201ENST00000389386 HTATSF1O43719 755 aaKnown RBP17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 ATF3P18847 181 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 ZNF165P49910 485 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 CLCN6P51797 869 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 ERCC6LQ2NKX8 1250 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 USHBP1Q8N6Y0 703 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 DACT1Q9NYF0 836 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 RSPH14Q9UHP6 348 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 LARGE1O95461 756 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 NWD1Q149M9 1564 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 ELP1O95163 1332 aa17.28■□□□□ 0.36
VPS9D1-201ENST00000389386 CCAR2Q8N163 923 aaKnown RBP17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 LRRCC1Q9C099 1032 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 KCND1Q9NSA2 647 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 TTC21AQ8NDW8 1320 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 DTNBO60941 627 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 TNNT3P45378 269 aaPredicted RBP17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 RASEFQ8IZ41 740 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 TXLNBQ8N3L3 684 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 NEK11Q8NG66 645 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 RASSF4Q9H2L5 321 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 L2HGDHQ9H9P8 463 aa17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 TRMT1Q9NXH9 659 aaKnown RBP17.27■□□□□ 0.36
VPS9D1-201ENST00000389386 NOP2P46087 812 aaKnown RBP17.27■□□□□ 0.35
VPS9D1-201ENST00000389386 CCZ1BP86790 482 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 CCZ1P86791 482 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 TEX35Q5T0J7 233 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 DNAJC25Q9H1X3 360 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 YY1AP1Q9H869 796 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 VPS37CA5D8V6 355 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 ZRANB2O95218 330 aaKnown RBP eCLIP17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 KRT85P78386 507 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 SARM1Q6SZW1 724 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 SYT10Q6XYQ8 523 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 CCDC83Q8IWF9 413 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 CLSTN2Q9H4D0 955 aa17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 RNF216Q9NWF9 866 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-201ENST00000389386 KIF2AO00139 706 aaPredicted RBP17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 CHL1O00533 1208 aa17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 NECTIN2Q92692 538 aa17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 ZBTB9Q96C00 473 aa17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 MRFAP1L1Q96HT8 127 aa17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 DDX19AQ9NUU7 478 aaKnown RBP17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 HYPKQ9NX55 129 aa17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 FLT4P35916 1363 aa17.25■□□□□ 0.35
VPS9D1-201ENST00000389386 CCDC69A6NI79 296 aa17.24■□□□□ 0.35
VPS9D1-201ENST00000389386 CCDC93Q567U6 631 aa17.24■□□□□ 0.35
VPS9D1-201ENST00000389386 LRRN4CLQ8ND94 238 aa17.24■□□□□ 0.35
VPS9D1-201ENST00000389386 SBNO1A3KN83 1393 aa17.24■□□□□ 0.35
VPS9D1-201ENST00000389386 KRBA2Q6ZNG9 492 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms