RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TACO1Q9BSH4 297 aaKnown RBP9.96□□□□□ -0.82
LIG3-202ENST00000378526 NUB1Q9Y5A7 615 aa9.96□□□□□ -0.82
LIG3-202ENST00000378526 C11orf95C9JLR9 678 aaPredicted RBP9.96□□□□□ -0.82
LIG3-202ENST00000378526 PPP1R21Q6ZMI0 780 aa9.96□□□□□ -0.82
LIG3-202ENST00000378526 SDCCAG8Q86SQ7 713 aaPredicted RBP9.96□□□□□ -0.82
LIG3-202ENST00000378526 MRFAP1Q9Y605 127 aa9.96□□□□□ -0.82
LIG3-202ENST00000378526 RASIP1Q5U651 963 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 FSD1Q9BTV5 496 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 ZHX3Q9H4I2 956 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.95□□□□□ -0.82
LIG3-202ENST00000378526 RRBP1Q9P2E9 1410 aaKnown RBP9.95□□□□□ -0.82
LIG3-202ENST00000378526 CCDC69A6NI79 296 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 AFAP1L2Q8N4X5 818 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.95□□□□□ -0.829e-7■□□□□ 9.1
LIG3-202ENST00000378526 PPP1R9AQ9ULJ8 1098 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 AKAP2Q9Y2D5 859 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 LMNB2Q03252 620 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 LMBR1Q8WVP7 490 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 SPDL1Q96EA4 605 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 PDE3AQ14432 1141 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 TDRD12Q587J7 1177 aaKnown RBP9.95□□□□□ -0.82
LIG3-202ENST00000378526 ARHGEF9O43307 516 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 SESN3P58005 492 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 HDAC1Q13547 482 aaPredicted RBP9.95□□□□□ -0.82
LIG3-202ENST00000378526 CCDC144CPQ8IYA2 1237 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 RPGRIP1LQ68CZ1 1315 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 CREB3O43889 395 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 PRPF4BQ13523 1007 aaKnown RBP9.95□□□□□ -0.82
LIG3-202ENST00000378526 SNCBQ16143 134 aa9.95□□□□□ -0.82
LIG3-202ENST00000378526 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.95□□□□□ -0.82
LIG3-202ENST00000378526 GOLGA6CA6NDK9 693 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 GOLGA6DP0CG33 693 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 C1orf141Q5JVX7 400 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 GOLGA6AQ9NYA3 693 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 NDC80O14777 642 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 NOP2P46087 812 aaKnown RBP9.94□□□□□ -0.82
LIG3-202ENST00000378526 FMN1Q68DA7 1419 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 PLCB1Q9NQ66 1216 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 DIABLOQ9NR28 239 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 CSB-PGBD3P0DP91 1061 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 UBE2HP62256 183 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 PAWRQ96IZ0 340 aaKnown RBP9.94□□□□□ -0.82
LIG3-202ENST00000378526 CENPKQ9BS16 269 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 RAB34Q9BZG1 259 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 HELBQ8NG08 1087 aaPredicted RBP9.94□□□□□ -0.82
LIG3-202ENST00000378526 ERO1AQ96HE7 468 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 SH2B1Q9NRF2 756 aaPredicted RBP9.94□□□□□ -0.82
LIG3-202ENST00000378526 ATP2B1P20020 1258 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 NOP14P78316 857 aaKnown RBP9.94□□□□□ -0.82
LIG3-202ENST00000378526 PAIP2BQ9ULR5 123 aaKnown RBP9.94□□□□□ -0.82
LIG3-202ENST00000378526 UTP14CQ5TAP6 766 aaKnown RBP9.94□□□□□ -0.82
LIG3-202ENST00000378526 RUFY4Q6ZNE9 571 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 CCDC63Q8NA47 563 aa9.94□□□□□ -0.82
LIG3-202ENST00000378526 SPECC1L-ADORA2AF8WAN1 911 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 KRT86O43790 486 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 KLHL40Q2TBA0 621 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 RSPH3Q86UC2 560 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 IWS1Q96ST2 819 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 ESRRGP62508 458 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 KRT83P78385 493 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 CCDC96Q2M329 555 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 DACT3Q96B18 629 aaPredicted RBP9.93□□□□□ -0.82
LIG3-202ENST00000378526 CTTNBP2NLQ9P2B4 639 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 UACAQ9BZF9 1416 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 CAMK4Q16566 473 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 BLOC1S2Q6QNY1 142 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 LRSAM1Q6UWE0 723 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 STAG1Q8WVM7 1258 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 GFM2Q969S9 779 aaKnown RBP9.93□□□□□ -0.82
LIG3-202ENST00000378526 SH3GL3Q99963 347 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 DYNC1I2Q13409 638 aaKnown RBP9.93□□□□□ -0.82
LIG3-202ENST00000378526 ZSCAN26Q16670 478 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 NRBF2Q96F24 287 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 RPGRIP1Q96KN7 1286 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 VIMP08670 466 aaKnown RBP9.93□□□□□ -0.82
LIG3-202ENST00000378526 TMED1Q13445 227 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 DTNBP1Q96EV8 351 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 E9PMD0 336 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 GNAI3P08754 354 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 PPP2R5AQ15172 486 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 TMEM57Q8N5G2 664 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 JAKMIP1Q96N16 626 aaKnown RBP9.93□□□□□ -0.82
LIG3-202ENST00000378526 YY1AP1Q9H869 796 aa9.93□□□□□ -0.82
LIG3-202ENST00000378526 ZC3H6P61129 1189 aaKnown RBP9.92□□□□□ -0.82
LIG3-202ENST00000378526 IKQ13123 557 aaPredicted RBP9.92□□□□□ -0.82
LIG3-202ENST00000378526 HAUS1Q96CS2 278 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 PALM3A6NDB9 673 aaPredicted RBP9.92□□□□□ -0.82
LIG3-202ENST00000378526 ATICP31939 592 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 GPR161Q8N6U8 529 aaKnown RBP9.92□□□□□ -0.82
LIG3-202ENST00000378526 TXNDC16Q9P2K2 825 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 SKOR1P84550 965 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 RPAP2Q8IXW5 612 aaPredicted RBP9.92□□□□□ -0.82
LIG3-202ENST00000378526 EFCAB13Q8IY85 973 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 GOLGA5Q8TBA6 731 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 TXNDC9O14530 226 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 UBTFL1P0CB47 393 aaPredicted RBP9.92□□□□□ -0.82
LIG3-202ENST00000378526 SNX16P57768 344 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 USP37Q86T82 979 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 LCA5Q86VQ0 697 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 HDAC9Q9UKV0 1011 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms