RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 BECN2A8MW95 431 aa18.72■□□□□ 0.59
CKAP4-201ENST00000378026 GLRX3O76003 335 aaKnown RBP18.72■□□□□ 0.59
CKAP4-201ENST00000378026 ANXA1P04083 346 aa18.72■□□□□ 0.59
CKAP4-201ENST00000378026 GTF3C6Q969F1 213 aa18.72■□□□□ 0.59
CKAP4-201ENST00000378026 TTC21AQ8NDW8 1320 aa18.72■□□□□ 0.59
CKAP4-201ENST00000378026 ELP1O95163 1332 aa18.71■□□□□ 0.59
CKAP4-201ENST00000378026 JAK2O60674 1132 aa18.71■□□□□ 0.59
CKAP4-201ENST00000378026 PDCP20941 246 aa18.71■□□□□ 0.59
CKAP4-201ENST00000378026 PA2G4Q9UQ80 394 aaKnown RBP18.71■□□□□ 0.59
CKAP4-201ENST00000378026 TTC21BQ7Z4L5 1316 aa18.71■□□□□ 0.59
CKAP4-201ENST00000378026 PRR36Q9H6K5 1346 aa18.71■□□□□ 0.59
CKAP4-201ENST00000378026 NECTIN1Q15223 517 aa18.71■□□□□ 0.59
CKAP4-201ENST00000378026 TAF7Q15545 349 aaPredicted RBP18.71■□□□□ 0.59
CKAP4-201ENST00000378026 CCDC171Q6TFL3 1326 aa18.7■□□□□ 0.58
CKAP4-201ENST00000378026 PPFIA3O75145 1194 aa18.7■□□□□ 0.58
CKAP4-201ENST00000378026 POLA2Q14181 598 aa18.7■□□□□ 0.58
CKAP4-201ENST00000378026 CLASRPQ8N2M8 674 aaKnown RBP18.7■□□□□ 0.58
CKAP4-201ENST00000378026 TMEM131LA2VDJ0 1609 aa18.7■□□□□ 0.58
CKAP4-201ENST00000378026 ERCC6LQ2NKX8 1250 aa18.7■□□□□ 0.58
CKAP4-201ENST00000378026 BLOC1S2Q6QNY1 142 aa18.7■□□□□ 0.58
CKAP4-201ENST00000378026 TIGD1Q96MW7 591 aa18.7■□□□□ 0.58
CKAP4-201ENST00000378026 IFIT2P09913 472 aaKnown RBP18.69■□□□□ 0.58
CKAP4-201ENST00000378026 GORABQ5T7V8 394 aa18.69■□□□□ 0.58
CKAP4-201ENST00000378026 TM6SF1Q9BZW5 370 aa18.69■□□□□ 0.58
CKAP4-201ENST00000378026 FTOQ9C0B1 505 aaKnown RBP eCLIP18.69■□□□□ 0.586e-6■□□□□ 8.1
CKAP4-201ENST00000378026 SLC27A2O14975 620 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 NMIQ13287 307 aaPredicted RBP18.68■□□□□ 0.58
CKAP4-201ENST00000378026 LRRN4CLQ8ND94 238 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 EYA1Q99502 592 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 ZNF446Q9NWS9 450 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 H3BQV1 296 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 SLU7O95391 586 aaKnown RBP18.68■□□□□ 0.58
CKAP4-201ENST00000378026 IFFO2Q5TF58 517 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 PLCD3Q8N3E9 789 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 LTV1Q96GA3 475 aaPredicted RBP18.68■□□□□ 0.58
CKAP4-201ENST00000378026 ERO1AQ96HE7 468 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 ACEP12821 1306 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 AMPHP49418 695 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 PDE4CQ08493 712 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 IQCB1Q15051 598 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 NYAP1Q6ZVC0 841 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 ECHDC1Q9NTX5 307 aa18.68■□□□□ 0.58
CKAP4-201ENST00000378026 NAP1L2Q9ULW6 460 aaPredicted RBP18.68■□□□□ 0.58
CKAP4-201ENST00000378026 PI4KAP2A4QPH2 592 aa18.67■□□□□ 0.58
CKAP4-201ENST00000378026 PI4KAP1Q8N8J0 262 aa18.67■□□□□ 0.58
CKAP4-201ENST00000378026 RBM43Q6ZSC3 357 aaKnown RBP18.67■□□□□ 0.58
CKAP4-201ENST00000378026 AACSQ86V21 672 aa18.67■□□□□ 0.58
CKAP4-201ENST00000378026 BRF1Q92994 677 aa18.67■□□□□ 0.58
CKAP4-201ENST00000378026 RIMS1Q86UR5 1692 aaKnown RBP18.67■□□□□ 0.58
CKAP4-201ENST00000378026 CCAR2Q8N163 923 aaKnown RBP18.66■□□□□ 0.58
CKAP4-201ENST00000378026 NOL10Q9BSC4 688 aaKnown RBP18.66■□□□□ 0.58
CKAP4-201ENST00000378026 CCDC8Q9H0W5 538 aaPredicted RBP18.66■□□□□ 0.58
CKAP4-201ENST00000378026 METP08581 1390 aa18.66■□□□□ 0.58
CKAP4-201ENST00000378026 PSMA5P28066 241 aa18.66■□□□□ 0.58
CKAP4-201ENST00000378026 CCZ1BP86790 482 aa18.66■□□□□ 0.58
CKAP4-201ENST00000378026 CCZ1P86791 482 aaPredicted RBP18.66■□□□□ 0.58
CKAP4-201ENST00000378026 KLHL34Q8N239 644 aa18.66■□□□□ 0.58
CKAP4-201ENST00000378026 PREX1Q8TCU6 1659 aa18.66■□□□□ 0.58
CKAP4-201ENST00000378026 ARHGEF10O15013 1369 aa18.65■□□□□ 0.58
CKAP4-201ENST00000378026 GNAT3A8MTJ3 354 aa18.65■□□□□ 0.58
CKAP4-201ENST00000378026 HSP90B1P14625 803 aaKnown RBP18.65■□□□□ 0.58
CKAP4-201ENST00000378026 IL17REQ8NFR9 667 aa18.65■□□□□ 0.58
CKAP4-201ENST00000378026 TOB2Q14106 344 aaPredicted RBP18.65■□□□□ 0.58
CKAP4-201ENST00000378026 SYT10Q6XYQ8 523 aa18.65■□□□□ 0.58
CKAP4-201ENST00000378026 BOLA2Q9H3K6 86 aa18.65■□□□□ 0.58
CKAP4-201ENST00000378026 A0A0D9SFI3 127 aa18.64■□□□□ 0.57
CKAP4-201ENST00000378026 MLECQ14165 292 aa18.64■□□□□ 0.57
CKAP4-201ENST00000378026 CCAR1Q8IX12 1150 aaKnown RBP18.64■□□□□ 0.57
CKAP4-201ENST00000378026 AOPEPQ8N6M6 819 aa18.64■□□□□ 0.57
CKAP4-201ENST00000378026 LRRC2Q9BYS8 371 aa18.64■□□□□ 0.57
CKAP4-201ENST00000378026 TTC41PQ6P2S7 1318 aa18.64■□□□□ 0.57
CKAP4-201ENST00000378026 POLR3GO15318 223 aaPredicted RBP18.64■□□□□ 0.57
CKAP4-201ENST00000378026 ERBB3P21860 1342 aa18.64■□□□□ 0.57
CKAP4-201ENST00000378026 CDC25BP30305 580 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 SNW1Q13573 536 aaKnown RBP18.63■□□□□ 0.57
CKAP4-201ENST00000378026 MAP4K1Q92918 833 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 MRFAP1L1Q96HT8 127 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 RPS6KB1P23443 525 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 HSP90AB4PQ58FF6 505 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 EVI5LQ96CN4 794 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 GPATCH3Q96I76 525 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 FSD1Q9BTV5 496 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 CHPF2Q9P2E5 772 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.63■□□□□ 0.57
CKAP4-201ENST00000378026 MAP3K5Q99683 1374 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 STX1AQ16623 288 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 FMNL2Q96PY5 1086 aa18.63■□□□□ 0.57
CKAP4-201ENST00000378026 DLC1Q96QB1 1528 aa18.62■□□□□ 0.57
CKAP4-201ENST00000378026 NEMFO60524 1076 aa18.62■□□□□ 0.57
CKAP4-201ENST00000378026 NUTM2GQ5VZR2 741 aa18.62■□□□□ 0.57
CKAP4-201ENST00000378026 DNAAF4Q8WXU2 420 aa18.62■□□□□ 0.57
CKAP4-201ENST00000378026 GOLPH3LQ9H4A5 285 aa18.62■□□□□ 0.57
CKAP4-201ENST00000378026 CALCOCO1Q9P1Z2 691 aa18.62■□□□□ 0.57
CKAP4-201ENST00000378026 BMS1Q14692 1282 aaKnown RBP18.61■□□□□ 0.57
CKAP4-201ENST00000378026 SIL1Q9H173 461 aa18.61■□□□□ 0.57
CKAP4-201ENST00000378026 ANKRD1Q15327 319 aa18.61■□□□□ 0.57
CKAP4-201ENST00000378026 ARHGAP29Q52LW3 1261 aa18.61■□□□□ 0.57
CKAP4-201ENST00000378026 KCNB2Q92953 911 aa18.61■□□□□ 0.57
CKAP4-201ENST00000378026 EDC3Q96F86 508 aaKnown RBP18.61■□□□□ 0.57
CKAP4-201ENST00000378026 C9orf78Q9NZ63 289 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms