RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 SSFA2P28290 1259 aa17.16■□□□□ 0.34
TCOF1-202ENST00000377797 NBPF5PQ86XG9 351 aaPredicted RBP17.16■□□□□ 0.34
TCOF1-202ENST00000377797 KLHDC4Q8TBB5 520 aa17.16■□□□□ 0.34
TCOF1-202ENST00000377797 FAM89AQ96GI7 184 aa17.16■□□□□ 0.34
TCOF1-202ENST00000377797 STK38Q15208 465 aa17.16■□□□□ 0.34
TCOF1-202ENST00000377797 TPD52L1Q16890 204 aaPredicted RBP17.15■□□□□ 0.34
TCOF1-202ENST00000377797 ZNF396Q96N95 335 aaPredicted RBP17.15■□□□□ 0.34
TCOF1-202ENST00000377797 PIK3C2BO00750 1634 aa17.15■□□□□ 0.34
TCOF1-202ENST00000377797 MINDY4BA8MYZ0 360 aa17.15■□□□□ 0.34
TCOF1-202ENST00000377797 TFCP2Q12800 502 aa17.15■□□□□ 0.34
TCOF1-202ENST00000377797 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.15■□□□□ 0.342e-7■■■■■ 35.6
TCOF1-202ENST00000377797 IRS4O14654 1257 aaPredicted RBP17.15■□□□□ 0.34
TCOF1-202ENST00000377797 ZNF213O14771 459 aa17.15■□□□□ 0.34
TCOF1-202ENST00000377797 GCKRQ14397 625 aa17.15■□□□□ 0.34
TCOF1-202ENST00000377797 ERVV-2B6SEH9 535 aa17.14■□□□□ 0.34
TCOF1-202ENST00000377797 BRPF1P55201 1214 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-202ENST00000377797 TNPO1Q92973 898 aaKnown RBP17.14■□□□□ 0.33
TCOF1-202ENST00000377797 SUCLG2Q96I99 432 aa17.14■□□□□ 0.33
TCOF1-202ENST00000377797 HOOK1Q9UJC3 728 aaKnown RBP17.14■□□□□ 0.33
TCOF1-202ENST00000377797 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-202ENST00000377797 PNPLA6Q8IY17 1366 aa17.14■□□□□ 0.33
TCOF1-202ENST00000377797 KINO60870 393 aaKnown RBP17.14■□□□□ 0.33
TCOF1-202ENST00000377797 HMGB1P09429 215 aaKnown RBP17.14■□□□□ 0.33
TCOF1-202ENST00000377797 CHMLP26374 656 aa17.14■□□□□ 0.33
TCOF1-202ENST00000377797 PPP1R1BQ9UD71 204 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-202ENST00000377797 TTF1Q15361 905 aaPredicted RBP17.13■□□□□ 0.33
TCOF1-202ENST00000377797 ADGRL3Q9HAR2 1447 aa17.13■□□□□ 0.33
TCOF1-202ENST00000377797 RPGRQ92834 1020 aaKnown RBP17.13■□□□□ 0.33
TCOF1-202ENST00000377797 SETDB2Q96T68 719 aa17.13■□□□□ 0.33
TCOF1-202ENST00000377797 UTP14AQ9BVJ6 771 aaKnown RBP17.13■□□□□ 0.33
TCOF1-202ENST00000377797 PES1O00541 588 aaKnown RBP17.13■□□□□ 0.33
TCOF1-202ENST00000377797 CCDC191Q8NCU4 936 aa17.13■□□□□ 0.33
TCOF1-202ENST00000377797 RBM8AQ9Y5S9 174 aaKnown RBP17.13■□□□□ 0.33
TCOF1-202ENST00000377797 CLSTN1O94985 981 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 HAND2P61296 217 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 NRXN1Q9ULB1 1477 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 CPSF1Q10570 1443 aaKnown RBP17.12■□□□□ 0.33
TCOF1-202ENST00000377797 ANAPC15P60006 121 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 ANO8Q9HCE9 1232 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-202ENST00000377797 VWDEQ8N2E2 1590 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 CDKL5O76039 1030 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 PDIA4P13667 645 aaKnown RBP17.12■□□□□ 0.33
TCOF1-202ENST00000377797 ME1P48163 572 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 TMX3Q96JJ7 454 aa17.12■□□□□ 0.33
TCOF1-202ENST00000377797 FRMPD1Q5SYB0 1578 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 UQCRFS1P1P0C7P4 283 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 ADAMTS13Q76LX8 1427 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 HELBQ8NG08 1087 aaPredicted RBP17.11■□□□□ 0.33
TCOF1-202ENST00000377797 NEK1Q96PY6 1258 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 BRINP3Q76B58 766 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 ANKRD18AQ8IVF6 992 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 TCEANC2Q96MN5 208 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 NLRP3Q96P20 1036 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 NMIQ13287 307 aaPredicted RBP17.11■□□□□ 0.33
TCOF1-202ENST00000377797 HMG20BQ9P0W2 317 aa17.11■□□□□ 0.33
TCOF1-202ENST00000377797 ZC3H13Q5T200 1668 aaKnown RBP17.1■□□□□ 0.33
TCOF1-202ENST00000377797 MED14O60244 1454 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 TIMM10P62072 90 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 FAM98CQ17RN3 349 aaKnown RBP17.1■□□□□ 0.33
TCOF1-202ENST00000377797 DZIP1Q86YF9 867 aaKnown RBP17.1■□□□□ 0.33
TCOF1-202ENST00000377797 SPATA32Q96LK8 384 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 IQSEC3Q9UPP2 1182 aaPredicted RBP17.1■□□□□ 0.33
TCOF1-202ENST00000377797 LETM1O95202 739 aaPredicted RBP17.1■□□□□ 0.33
TCOF1-202ENST00000377797 ATP2B2Q01814 1243 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 BEND3Q5T5X7 828 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 SNX21Q969T3 373 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 CARD10Q9BWT7 1032 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 USP26Q9BXU7 913 aa17.1■□□□□ 0.33
TCOF1-202ENST00000377797 IKQ13123 557 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-202ENST00000377797 PROSER3Q2NL68 480 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 MCMDC2Q4G0Z9 681 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 PAG1Q9NWQ8 432 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 NEURL1BA8MQ27 555 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 ZFYP08048 801 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-202ENST00000377797 RBM5P52756 815 aaKnown RBP eCLIP17.09■□□□□ 0.33
TCOF1-202ENST00000377797 TSPY26PQ9H489 355 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 AXIN2Q9Y2T1 843 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 WDR17Q8IZU2 1322 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 CFAP45Q9UL16 551 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 CTDP1Q9Y5B0 961 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-202ENST00000377797 ADGRB1O14514 1584 aa17.09■□□□□ 0.33
TCOF1-202ENST00000377797 EYA2O00167 538 aa17.08■□□□□ 0.33
TCOF1-202ENST00000377797 SSH3Q8TE77 659 aa17.08■□□□□ 0.33
TCOF1-202ENST00000377797 JMYQ8N9B5 988 aa17.08■□□□□ 0.32
TCOF1-202ENST00000377797 DLC1Q96QB1 1528 aa17.08■□□□□ 0.32
TCOF1-202ENST00000377797 C6orf229H3BNL8 230 aa17.08■□□□□ 0.32
TCOF1-202ENST00000377797 CCT2P78371 535 aaKnown RBP17.08■□□□□ 0.32
TCOF1-202ENST00000377797 RTCBQ9Y3I0 505 aaKnown RBP17.08■□□□□ 0.32
TCOF1-202ENST00000377797 USP5P45974 858 aa17.08■□□□□ 0.32
TCOF1-202ENST00000377797 SPATA31A3Q5VYP0 1347 aa17.07■□□□□ 0.32
TCOF1-202ENST00000377797 PRAMEF22A3QJZ6 481 aa17.07■□□□□ 0.32
TCOF1-202ENST00000377797 DBNDD2Q9BQY9 259 aa17.07■□□□□ 0.32
TCOF1-202ENST00000377797 KIAA1210Q9ULL0 1709 aa17.07■□□□□ 0.32
TCOF1-202ENST00000377797 SLC9C2Q5TAH2 1124 aa17.07■□□□□ 0.32
TCOF1-202ENST00000377797 ZNF594Q96JF6 807 aaPredicted RBP17.07■□□□□ 0.32
TCOF1-202ENST00000377797 PREX1Q8TCU6 1659 aa17.07■□□□□ 0.32
TCOF1-202ENST00000377797 DEPDC5O75140 1603 aa17.06■□□□□ 0.32
TCOF1-202ENST00000377797 USP31Q70CQ4 1352 aa17.06■□□□□ 0.32
TCOF1-202ENST00000377797 TTLL7Q6ZT98 887 aa17.06■□□□□ 0.32
TCOF1-202ENST00000377797 SH3TC1Q8TE82 1336 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms