RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 PLBD2Q8NHP8 589 aa21.75■■□□□ 1.07
HMGN4-201ENST00000377575 UTP14AQ9BVJ6 771 aaKnown RBP21.75■■□□□ 1.07
HMGN4-201ENST00000377575 NFKBIEO00221 500 aa21.74■■□□□ 1.07
HMGN4-201ENST00000377575 ELL2O00472 640 aaPredicted RBP21.74■■□□□ 1.07
HMGN4-201ENST00000377575 ALDH1B1P30837 517 aa21.74■■□□□ 1.07
HMGN4-201ENST00000377575 CRY2Q49AN0 593 aa21.74■■□□□ 1.07
HMGN4-201ENST00000377575 TCIRG1Q13488 830 aa21.73■■□□□ 1.07
HMGN4-201ENST00000377575 ANKRD13DQ6ZTN6 518 aa21.73■■□□□ 1.07
HMGN4-201ENST00000377575 FAM9BQ8IZU0 186 aa21.73■■□□□ 1.07
HMGN4-201ENST00000377575 C8orf58Q8NAV2 365 aa21.73■■□□□ 1.07
HMGN4-201ENST00000377575 RPGRQ92834 1020 aaKnown RBP21.73■■□□□ 1.07
HMGN4-201ENST00000377575 TSR2Q969E8 191 aaKnown RBP21.73■■□□□ 1.07
HMGN4-201ENST00000377575 TAOK3Q9H2K8 898 aa21.73■■□□□ 1.07
HMGN4-201ENST00000377575 LTBP3Q9NS15 1303 aa21.73■■□□□ 1.07
HMGN4-201ENST00000377575 CCDC30Q5VVM6 783 aa21.72■■□□□ 1.07
HMGN4-201ENST00000377575 NLRP10Q86W26 655 aa21.72■■□□□ 1.07
HMGN4-201ENST00000377575 KDM2BQ8NHM5 1336 aa21.72■■□□□ 1.07
HMGN4-201ENST00000377575 GOLGA2Q08379 1002 aa21.71■■□□□ 1.07
HMGN4-201ENST00000377575 CCDC93Q567U6 631 aa21.71■■□□□ 1.07
HMGN4-201ENST00000377575 CACNA1FO60840 1977 aa21.7■■□□□ 1.07
HMGN4-201ENST00000377575 DDX60Q8IY21 1712 aaKnown RBP21.7■■□□□ 1.06
HMGN4-201ENST00000377575 WDR63Q8IWG1 891 aa21.69■■□□□ 1.06
HMGN4-201ENST00000377575 NLRP3Q96P20 1036 aa21.69■■□□□ 1.06
HMGN4-201ENST00000377575 TRMT112Q9UI30 125 aaKnown RBP21.69■■□□□ 1.06
HMGN4-201ENST00000377575 SALL2Q9Y467 1007 aaPredicted RBP21.69■■□□□ 1.06
HMGN4-201ENST00000377575 HOXA10P31260 410 aaPredicted RBP21.68■■□□□ 1.06
HMGN4-201ENST00000377575 PRELPP51888 382 aa21.68■■□□□ 1.06
HMGN4-201ENST00000377575 SLC10A5Q5PT55 438 aa21.68■■□□□ 1.06
HMGN4-201ENST00000377575 TSPYL6Q8N831 410 aa21.68■■□□□ 1.06
HMGN4-201ENST00000377575 C7orf43Q8WVR3 580 aa21.68■■□□□ 1.06
HMGN4-201ENST00000377575 RBM17Q96I25 401 aaKnown RBP21.68■■□□□ 1.06
HMGN4-201ENST00000377575 SH3TC1Q8TE82 1336 aa21.68■■□□□ 1.06
HMGN4-201ENST00000377575 FANCIQ9NVI1 1328 aa21.67■■□□□ 1.06
HMGN4-201ENST00000377575 KIF3CO14782 793 aa21.67■■□□□ 1.06
HMGN4-201ENST00000377575 TWISTNBQ3B726 338 aaPredicted RBP21.67■■□□□ 1.06
HMGN4-201ENST00000377575 RIC3Q7Z5B4 369 aa21.67■■□□□ 1.06
HMGN4-201ENST00000377575 RTKN2Q8IZC4 609 aa21.67■■□□□ 1.06
HMGN4-201ENST00000377575 STK31Q9BXU1 1019 aa21.67■■□□□ 1.06
HMGN4-201ENST00000377575 DDX58O95786 925 aaKnown RBP21.66■■□□□ 1.06
HMGN4-201ENST00000377575 CRAMP1Q96RY5 1269 aa21.66■■□□□ 1.06
HMGN4-201ENST00000377575 ISCA1Q9BUE6 129 aa21.66■■□□□ 1.06
HMGN4-201ENST00000377575 PHAXQ9H814 394 aaKnown RBP21.66■■□□□ 1.06
HMGN4-201ENST00000377575 NMRK2Q9NPI5 230 aa21.65■■□□□ 1.06
HMGN4-201ENST00000377575 FKBP4Q02790 459 aaKnown RBP eCLIP21.64■■□□□ 1.05
HMGN4-201ENST00000377575 CC2D2BQ6DHV5 1058 aa21.64■■□□□ 1.05
HMGN4-201ENST00000377575 C3orf67Q6ZVT6 689 aa21.64■■□□□ 1.05
HMGN4-201ENST00000377575 ATP5J2-PTCD1G3V325 749 aa21.63■■□□□ 1.05
HMGN4-201ENST00000377575 PPEF1O14829 653 aaPredicted RBP21.63■■□□□ 1.05
HMGN4-201ENST00000377575 TRIM28Q13263 835 aaKnown RBP21.63■■□□□ 1.05
HMGN4-201ENST00000377575 GRIPAP1Q4V328 841 aa21.63■■□□□ 1.05
HMGN4-201ENST00000377575 WDR90Q96KV7 1748 aa21.63■■□□□ 1.05
HMGN4-201ENST00000377575 GLTPD2A6NH11 291 aa21.62■■□□□ 1.05
HMGN4-201ENST00000377575 HCLS1P14317 486 aaPredicted RBP21.62■■□□□ 1.05
HMGN4-201ENST00000377575 C16orf71Q8IYS4 520 aaPredicted RBP21.62■■□□□ 1.05
HMGN4-201ENST00000377575 SNED1Q8TER0 1413 aa21.62■■□□□ 1.05
HMGN4-201ENST00000377575 DPY19L2Q6NUT2 758 aa21.61■■□□□ 1.05
HMGN4-201ENST00000377575 OLFM4Q6UX06 510 aa21.61■■□□□ 1.05
HMGN4-201ENST00000377575 TMX4Q9H1E5 349 aaPredicted RBP21.61■■□□□ 1.05
HMGN4-201ENST00000377575 MYH16Q9H6N6 1097 aa21.61■■□□□ 1.05
HMGN4-201ENST00000377575 ABCC4O15439 1325 aa21.6■■□□□ 1.05
HMGN4-201ENST00000377575 TOMM70O94826 608 aa21.6■■□□□ 1.05
HMGN4-201ENST00000377575 SYNE4Q8N205 404 aa21.6■■□□□ 1.05
HMGN4-201ENST00000377575 PSMD1Q99460 953 aa21.6■■□□□ 1.05
HMGN4-201ENST00000377575 MYD88Q99836 296 aa21.6■■□□□ 1.05
HMGN4-201ENST00000377575 TAF1P21675 1872 aa21.59■■□□□ 1.05
HMGN4-201ENST00000377575 DDX46Q7L014 1031 aaKnown RBP21.59■■□□□ 1.05
HMGN4-201ENST00000377575 ZNF428Q96B54 188 aa21.59■■□□□ 1.05
HMGN4-201ENST00000377575 FAM89AQ96GI7 184 aa21.59■■□□□ 1.05
HMGN4-201ENST00000377575 METTL22Q9BUU2 404 aaPredicted RBP21.59■■□□□ 1.05
HMGN4-201ENST00000377575 ZNF277Q9NRM2 450 aaPredicted RBP21.59■■□□□ 1.05
HMGN4-201ENST00000377575 HSP90B1P14625 803 aaKnown RBP21.58■■□□□ 1.05
HMGN4-201ENST00000377575 CCDC191Q8NCU4 936 aa21.58■■□□□ 1.05
HMGN4-201ENST00000377575 RRAGCQ9HB90 399 aa21.58■■□□□ 1.05
HMGN4-201ENST00000377575 MAP3K2Q9Y2U5 619 aa21.58■■□□□ 1.05
HMGN4-201ENST00000377575 LRRC37AA6NMS7 1700 aa21.58■■□□□ 1.04
HMGN4-201ENST00000377575 MYH3P11055 1940 aa21.57■■□□□ 1.04
HMGN4-201ENST00000377575 TCERG1O14776 1098 aaKnown RBP21.57■■□□□ 1.04
HMGN4-201ENST00000377575 IARSP41252 1262 aaKnown RBP21.57■■□□□ 1.04
HMGN4-201ENST00000377575 EXOSC9Q06265 439 aaKnown RBP21.57■■□□□ 1.04
HMGN4-201ENST00000377575 KSR2Q6VAB6 950 aa21.57■■□□□ 1.04
HMGN4-201ENST00000377575 ZBTB38Q8NAP3 1195 aaPredicted RBP21.57■■□□□ 1.04
HMGN4-201ENST00000377575 CWC25Q9NXE8 425 aaPredicted RBP21.57■■□□□ 1.04
HMGN4-201ENST00000377575 CCER2I3L3R5 266 aa21.56■■□□□ 1.04
HMGN4-201ENST00000377575 IRS4O14654 1257 aaPredicted RBP21.56■■□□□ 1.04
HMGN4-201ENST00000377575 BBOX1O75936 387 aa21.56■■□□□ 1.04
HMGN4-201ENST00000377575 SLC4A2P04920 1241 aa21.56■■□□□ 1.04
HMGN4-201ENST00000377575 NEXNQ0ZGT2 675 aa21.56■■□□□ 1.04
HMGN4-201ENST00000377575 ATP6V0A2Q9Y487 856 aa21.56■■□□□ 1.04
HMGN4-201ENST00000377575 PI4KAP2A4QPH2 592 aa21.55■■□□□ 1.04
HMGN4-201ENST00000377575 GRAPQ13588 217 aa21.55■■□□□ 1.04
HMGN4-201ENST00000377575 RTL5Q5HYW3 569 aaPredicted RBP21.55■■□□□ 1.04
HMGN4-201ENST00000377575 TMC4Q7Z404 712 aa21.55■■□□□ 1.04
HMGN4-201ENST00000377575 PI4KAP1Q8N8J0 262 aa21.55■■□□□ 1.04
HMGN4-201ENST00000377575 RBM46Q8TBY0 533 aaKnown RBP21.55■■□□□ 1.04
HMGN4-201ENST00000377575 GRAPLQ8TC17 118 aaPredicted RBP21.55■■□□□ 1.04
HMGN4-201ENST00000377575 SPINK5Q9NQ38 1064 aaPredicted RBP21.55■■□□□ 1.04
HMGN4-201ENST00000377575 SCN4AP35499 1836 aa21.55■■□□□ 1.04
HMGN4-201ENST00000377575 ZNF521Q96K83 1311 aa21.55■■□□□ 1.04
HMGN4-201ENST00000377575 VAMP4O75379 141 aa21.54■■□□□ 1.04
HMGN4-201ENST00000377575 VEGFAP15692 232 aaPredicted RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms