RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CHMP3Q9Y3E7 222 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 ADH6P28332 368 aa4.78□□□□□ -1.64
VPS13A-206ENST00000376646 HIRAP54198 1017 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-206ENST00000376646 FAM182BQ5T319 152 aa4.78□□□□□ -1.64
VPS13A-206ENST00000376646 ZNF468Q5VIY5 522 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-206ENST00000376646 SYT9Q86SS6 491 aa4.78□□□□□ -1.64
VPS13A-206ENST00000376646 BRD7Q9NPI1 651 aa4.78□□□□□ -1.64
VPS13A-206ENST00000376646 TYRO3Q06418 890 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 LINC00114Q6XXX2 140 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 CHSY3Q70JA7 882 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-206ENST00000376646 ARID3CA6NKF2 412 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 PHF20L1A8MW92 1017 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 C1orf53Q5VUE5 145 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 KLK14Q9P0G3 267 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 BCS1LQ9Y276 419 aa4.77□□□□□ -1.65
VPS13A-206ENST00000376646 DGKGP49619 791 aa4.76□□□□□ -1.65
VPS13A-206ENST00000376646 PLA2G4EQ3MJ16 856 aa4.76□□□□□ -1.65
VPS13A-206ENST00000376646 MKL2Q9ULH7 1088 aa4.76□□□□□ -1.65
VPS13A-206ENST00000376646 SPEM2Q0P670 501 aa4.76□□□□□ -1.65
VPS13A-206ENST00000376646 STK32AQ8WU08 396 aa4.76□□□□□ -1.65
VPS13A-206ENST00000376646 PRIMPOLQ96LW4 560 aa4.76□□□□□ -1.65
VPS13A-206ENST00000376646 ZMIZ1Q9ULJ6 1067 aa4.76□□□□□ -1.65
VPS13A-206ENST00000376646 NOVA2Q9UNW9 492 aaKnown RBP4.76□□□□□ -1.65
VPS13A-206ENST00000376646 KRBA1A5PL33 1030 aa4.75□□□□□ -1.65
VPS13A-206ENST00000376646 BTLAQ7Z6A9 289 aa4.75□□□□□ -1.65
VPS13A-206ENST00000376646 FAM200AQ8TCP9 573 aa4.75□□□□□ -1.65
VPS13A-206ENST00000376646 IGFBP4P22692 258 aa4.75□□□□□ -1.65
VPS13A-206ENST00000376646 C8orf86Q6ZUL3 223 aa4.75□□□□□ -1.65
VPS13A-206ENST00000376646 STAG2Q8N3U4 1231 aa4.75□□□□□ -1.65
VPS13A-206ENST00000376646 ZMYND15Q9H091 742 aa4.75□□□□□ -1.65
VPS13A-206ENST00000376646 QTRT2Q9H974 415 aaKnown RBP4.75□□□□□ -1.65
VPS13A-206ENST00000376646 GPC6Q9Y625 555 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-206ENST00000376646 PRMT3O60678 531 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 GRNP28799 593 aaKnown RBP4.74□□□□□ -1.65
VPS13A-206ENST00000376646 WEE1P30291 646 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 TBC1D8BQ0IIM8 1120 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 BHMTQ93088 406 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 IGFLR1Q9H665 355 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 ANKIB1Q9P2G1 1089 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 KCNH4Q9UQ05 1017 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 USP20Q9Y2K6 914 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 DGKZQ13574 1117 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 RTN1Q16799 776 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 CAPN12Q6ZSI9 719 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 NBPF11Q86T75 865 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 TRIM11Q96F44 468 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 MDFIQ99750 246 aa4.74□□□□□ -1.65
VPS13A-206ENST00000376646 AVENQ9NQS1 362 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-206ENST00000376646 ELOA3CA0A087WX78 387 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-206ENST00000376646 ELOA3DA6NLF2 546 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-206ENST00000376646 SRPK2P78362 688 aaKnown RBP4.73□□□□□ -1.65
VPS13A-206ENST00000376646 FKBP5Q13451 457 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-206ENST00000376646 ELOA3BQ3SY89 546 aa4.73□□□□□ -1.65
VPS13A-206ENST00000376646 ELOA3Q8NG57 546 aa4.73□□□□□ -1.65
VPS13A-206ENST00000376646 DMGDHQ9UI17 866 aaKnown RBP4.73□□□□□ -1.65
VPS13A-206ENST00000376646 LRFN2Q9ULH4 789 aa4.73□□□□□ -1.65
VPS13A-206ENST00000376646 STARD13Q9Y3M8 1113 aa4.73□□□□□ -1.65
VPS13A-206ENST00000376646 GTF3C3Q9Y5Q9 886 aa4.73□□□□□ -1.65
VPS13A-206ENST00000376646 GNB5O14775 395 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 SIN3BO75182 1162 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 FAM69CQ0P6D2 419 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 ALBP02768 609 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 PROCP04070 461 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 ADH7P40394 386 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 KCNQ4P56696 695 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 MKNK1Q9BUB5 465 aa4.72□□□□□ -1.65
VPS13A-206ENST00000376646 FAM229AH3BQW9 127 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 TGFBR3LH3BV60 316 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 M0R082 166 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 IDH3AP50213 366 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 KRT25Q7Z3Z0 450 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 ZNF417Q8TAU3 575 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 ZNF587Q96SQ5 575 aaPredicted RBP4.71□□□□□ -1.65
VPS13A-206ENST00000376646 PLVAPQ9BX97 442 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 SAP130Q9H0E3 1048 aa4.71□□□□□ -1.65
VPS13A-206ENST00000376646 OCLNQ16625 522 aa4.71□□□□□ -1.66
VPS13A-206ENST00000376646 FAM26DQ5JW98 314 aa4.71□□□□□ -1.66
VPS13A-206ENST00000376646 TMEM164Q5U3C3 297 aa4.71□□□□□ -1.66
VPS13A-206ENST00000376646 TNFRSF25Q93038 417 aa4.71□□□□□ -1.66
VPS13A-206ENST00000376646 VTI1AQ96AJ9 217 aa4.71□□□□□ -1.66
VPS13A-206ENST00000376646 GSX2Q9BZM3 304 aa4.71□□□□□ -1.66
VPS13A-206ENST00000376646 ADARB2-AS1A8MUL3 147 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 NFKB1P19838 968 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 ALAS2P22557 587 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 INPP5BP32019 993 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 CHRNA4P43681 627 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 COL9A3Q14050 684 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-206ENST00000376646 UBE2OQ9C0C9 1292 aaKnown RBP4.7□□□□□ -1.66
VPS13A-206ENST00000376646 SLAIN2Q9P270 581 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 ACIN1Q9UKV3 1341 aaKnown RBP4.7□□□□□ -1.66
VPS13A-206ENST00000376646 FOXO3O43524 673 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 KRTAP1-1Q07627 177 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 COX20Q5RI15 118 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 ZFATQ9P243 1243 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 NAGPAQ9UK23 515 aa4.7□□□□□ -1.66
VPS13A-206ENST00000376646 C1QTNF9BB2RNN3 333 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 MICAL2O94851 1124 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 TARSP26639 723 aaKnown RBP4.69□□□□□ -1.66
VPS13A-206ENST00000376646 SCNN1AP37088 669 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms