RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 LRRC27Q9C0I9 530 aa14.27□□□□□ -0.12
VPS13A-204ENST00000376634 GRIN2BQ13224 1484 aa14.27□□□□□ -0.12
VPS13A-204ENST00000376634 FCHSD2O94868 740 aa14.27□□□□□ -0.12
VPS13A-204ENST00000376634 PPP4R3BQ5MIZ7 849 aa14.27□□□□□ -0.12
VPS13A-204ENST00000376634 TMEM57Q8N5G2 664 aa14.27□□□□□ -0.12
VPS13A-204ENST00000376634 TRMT1Q9NXH9 659 aaKnown RBP14.27□□□□□ -0.12
VPS13A-204ENST00000376634 CKAP2LQ8IYA6 745 aa14.27□□□□□ -0.13
VPS13A-204ENST00000376634 TTC16Q8NEE8 873 aa14.27□□□□□ -0.13
VPS13A-204ENST00000376634 ANAPC4Q9UJX5 808 aa14.27□□□□□ -0.13
VPS13A-204ENST00000376634 NFE2L2Q16236 605 aa14.27□□□□□ -0.13
VPS13A-204ENST00000376634 HYPKQ9NX55 129 aa14.27□□□□□ -0.13
VPS13A-204ENST00000376634 CCDC6Q16204 474 aa14.27□□□□□ -0.13
VPS13A-204ENST00000376634 BOLA2Q9H3K6 86 aa14.27□□□□□ -0.13
VPS13A-204ENST00000376634 GTF2A1P52655 376 aaPredicted RBP14.26□□□□□ -0.13
VPS13A-204ENST00000376634 LRSAM1Q6UWE0 723 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 CCDC82Q8N4S0 544 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 SELENOOQ9BVL4 669 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 GOLGA8AA7E2F4 631 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 MYO1BO43795 1136 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 NOL3O60936 208 aaKnown RBP14.26□□□□□ -0.13
VPS13A-204ENST00000376634 HLA-DOAP06340 250 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 PSMC4P43686 418 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 DDX19AQ9NUU7 478 aaKnown RBP14.26□□□□□ -0.13
VPS13A-204ENST00000376634 RMND1Q9NWS8 449 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 LIMCH1Q9UPQ0 1083 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 BAG3O95817 575 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 PRPHP41219 470 aa14.26□□□□□ -0.13
VPS13A-204ENST00000376634 DDX46Q7L014 1031 aaKnown RBP14.26□□□□□ -0.13
VPS13A-204ENST00000376634 MAP7D1Q3KQU3 841 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 DUSP27Q5VZP5 1158 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 ANKLE2Q86XL3 938 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 CPLX3Q8WVH0 158 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 IVLP07476 585 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 UBA7P41226 1012 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 CFAP58Q5T655 872 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 TRERF1Q96PN7 1200 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 IQGAP2Q13576 1575 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 SLU7O95391 586 aaKnown RBP14.25□□□□□ -0.13
VPS13A-204ENST00000376634 KCNH5Q8NCM2 988 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 CAMSAP2Q08AD1 1489 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 WDR66Q8TBY9 1149 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 SLC12A5Q9H2X9 1139 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 TMEM67Q5HYA8 995 aa14.25□□□□□ -0.13
VPS13A-204ENST00000376634 RPAP2Q8IXW5 612 aaPredicted RBP14.24□□□□□ -0.13
VPS13A-204ENST00000376634 TOP2BQ02880 1626 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 MFSD6Q6ZSS7 791 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 CCDC14Q49A88 953 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 GUCY1B3Q02153 619 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 CEP135Q66GS9 1140 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 CCT2P78371 535 aaKnown RBP14.24□□□□□ -0.13
VPS13A-204ENST00000376634 BIN1O00499 593 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 KAT14Q9H8E8 782 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 PAXBP1Q9Y5B6 917 aa14.24□□□□□ -0.13
VPS13A-204ENST00000376634 PTCD1O75127 700 aaKnown RBP14.23□□□□□ -0.13
VPS13A-204ENST00000376634 TRIM47Q96LD4 638 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 TTC14Q96N46 770 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 SMC6Q96SB8 1091 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 CTAGE1Q96RT6 745 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 SLC52A1Q9NWF4 448 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 RPGRIP1LQ68CZ1 1315 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 CCDC171Q6TFL3 1326 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 CTAGE9A4FU28 777 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 IDEP14735 1019 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 STAT6P42226 847 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 MIS18AQ9NYP9 233 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 ATP2A1O14983 1001 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 ZBTB16Q05516 673 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 AMOTQ4VCS5 1084 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 MICU3Q86XE3 530 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 ABCC11Q96J66 1382 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 CCDC144CPQ8IYA2 1237 aa14.23□□□□□ -0.13
VPS13A-204ENST00000376634 DYNC1I1O14576 645 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 STX6O43752 255 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 GSTA5Q7RTV2 222 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 SMC1BQ8NDV3 1235 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 PCF11O94913 1555 aaKnown RBP14.22□□□□□ -0.13
VPS13A-204ENST00000376634 ADCY5O95622 1261 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 METAP2P50579 478 aaKnown RBP eCLIP14.22□□□□□ -0.13
VPS13A-204ENST00000376634 XPCQ01831 940 aaPredicted RBP14.22□□□□□ -0.13
VPS13A-204ENST00000376634 MYD88Q99836 296 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 SYNJ1O43426 1573 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 WDR70Q9NW82 654 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 ZHX1Q9UKY1 873 aaPredicted RBP14.22□□□□□ -0.13
VPS13A-204ENST00000376634 TMPOP42166 694 aaKnown RBP14.22□□□□□ -0.13
VPS13A-204ENST00000376634 EIF2AK4Q9P2K8 1649 aaKnown RBP14.22□□□□□ -0.13
VPS13A-204ENST00000376634 CLGNO14967 610 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 SNX16P57768 344 aa14.22□□□□□ -0.13
VPS13A-204ENST00000376634 MCM5P33992 734 aa14.21□□□□□ -0.13
VPS13A-204ENST00000376634 MMRN2Q9H8L6 949 aa14.21□□□□□ -0.13
VPS13A-204ENST00000376634 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.21□□□□□ -0.139e-7■■□□□ 14
VPS13A-204ENST00000376634 SMARCA5O60264 1052 aaPredicted RBP14.21□□□□□ -0.13
VPS13A-204ENST00000376634 SH3BP5O60239 455 aa14.21□□□□□ -0.13
VPS13A-204ENST00000376634 MKRN1Q9UHC7 482 aaKnown RBP14.21□□□□□ -0.13
VPS13A-204ENST00000376634 PHACTR2O75167 634 aa14.21□□□□□ -0.13
VPS13A-204ENST00000376634 KRT13P13646 458 aa14.21□□□□□ -0.13
VPS13A-204ENST00000376634 CCDC63Q8NA47 563 aa14.21□□□□□ -0.13
VPS13A-204ENST00000376634 IMPG2Q9BZV3 1241 aa14.21□□□□□ -0.13
VPS13A-204ENST00000376634 GSTO1P78417 241 aa14.21□□□□□ -0.14
VPS13A-204ENST00000376634 NDC80O14777 642 aa14.21□□□□□ -0.14
VPS13A-204ENST00000376634 ALDH1L2Q3SY69 923 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms