RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 BCORQ6W2J9 1755 aa17.76■□□□□ 0.43
HMGA1-203ENST00000374116 PI4KAP2A4QPH2 592 aa17.76■□□□□ 0.43
HMGA1-203ENST00000374116 RIC3Q7Z5B4 369 aa17.76■□□□□ 0.43
HMGA1-203ENST00000374116 PI4KAP1Q8N8J0 262 aa17.76■□□□□ 0.43
HMGA1-203ENST00000374116 ATP5J2-PTCD1G3V325 749 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 SMC5Q8IY18 1101 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 CHMP4AQ9BY43 222 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 MTFR1LQ9H019 292 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 MAP3K2Q9Y2U5 619 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 CACNA1FO60840 1977 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 MMP10P09238 476 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 NFIXQ14938 502 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 PLBD2Q8NHP8 589 aa17.75■□□□□ 0.43
HMGA1-203ENST00000374116 DAXXQ9UER7 740 aaPredicted RBP17.75■□□□□ 0.43
HMGA1-203ENST00000374116 ADCY9O60503 1353 aa17.74■□□□□ 0.43
HMGA1-203ENST00000374116 GIGYF2Q6Y7W6 1299 aaKnown RBP17.74■□□□□ 0.43
HMGA1-203ENST00000374116 CCDC24Q8N4L8 307 aa17.74■□□□□ 0.43
HMGA1-203ENST00000374116 SLC16A10Q8TF71 515 aa17.74■□□□□ 0.43
HMGA1-203ENST00000374116 ARFGEF2Q9Y6D5 1785 aa17.73■□□□□ 0.43
HMGA1-203ENST00000374116 DDR1Q08345 913 aa17.73■□□□□ 0.43
HMGA1-203ENST00000374116 NIP7Q9Y221 180 aaKnown RBP eCLIP17.73■□□□□ 0.43
HMGA1-203ENST00000374116 ERVV-1B6SEH8 477 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 EIF5BO60841 1220 aaKnown RBP17.72■□□□□ 0.43
HMGA1-203ENST00000374116 NLGN1Q8N2Q7 840 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 MYD88Q99836 296 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 UBN2Q6ZU65 1347 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 DDX58O95786 925 aaKnown RBP17.72■□□□□ 0.43
HMGA1-203ENST00000374116 PTGER2P43116 358 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 INTS3Q68E01 1043 aaKnown RBP17.72■□□□□ 0.43
HMGA1-203ENST00000374116 SLC4A10Q6U841 1118 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 KSR2Q6VAB6 950 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 PKNOX2Q96KN3 472 aa17.72■□□□□ 0.43
HMGA1-203ENST00000374116 GOLGB1Q14789 3259 aaKnown RBP17.72■□□□□ 0.43
HMGA1-203ENST00000374116 PTPRCP08575 1304 aa17.71■□□□□ 0.43
HMGA1-203ENST00000374116 TM4SF1P30408 202 aa17.71■□□□□ 0.43
HMGA1-203ENST00000374116 SPON1Q9HCB6 807 aa17.71■□□□□ 0.43
HMGA1-203ENST00000374116 ZNF652Q9Y2D9 606 aa17.71■□□□□ 0.43
HMGA1-203ENST00000374116 CWF19L2Q2TBE0 894 aaKnown RBP17.7■□□□□ 0.42
HMGA1-203ENST00000374116 CLEC4GQ6UXB4 293 aa17.7■□□□□ 0.42
HMGA1-203ENST00000374116 JARID2Q92833 1246 aaPredicted RBP17.7■□□□□ 0.42
HMGA1-203ENST00000374116 SETDB2Q96T68 719 aa17.7■□□□□ 0.42
HMGA1-203ENST00000374116 POLRMTO00411 1230 aaKnown RBP17.7■□□□□ 0.42
HMGA1-203ENST00000374116 TCIRG1Q13488 830 aa17.7■□□□□ 0.42
HMGA1-203ENST00000374116 KLHL34Q8N239 644 aa17.7■□□□□ 0.42
HMGA1-203ENST00000374116 SGIP1Q9BQI5 828 aa17.7■□□□□ 0.42
HMGA1-203ENST00000374116 SUSD4Q5VX71 490 aa17.69■□□□□ 0.42
HMGA1-203ENST00000374116 ZNF34Q8IZ26 560 aa17.69■□□□□ 0.42
HMGA1-203ENST00000374116 DNAAF4Q8WXU2 420 aa17.69■□□□□ 0.42
HMGA1-203ENST00000374116 PPP1R1BQ9UD71 204 aaPredicted RBP17.69■□□□□ 0.42
HMGA1-203ENST00000374116 IGKV5-2P06315 115 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 GLIPR1L2Q4G1C9 344 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 NUTM1Q86Y26 1132 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 SYNE4Q8N205 404 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 METTL22Q9BUU2 404 aaPredicted RBP17.68■□□□□ 0.42
HMGA1-203ENST00000374116 UPF2Q9HAU5 1272 aaKnown RBP17.68■□□□□ 0.42
HMGA1-203ENST00000374116 PARP3Q9Y6F1 533 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 SEC24BO95487 1268 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 SERPINB2P05120 415 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 POLD1P28340 1107 aa17.68■□□□□ 0.42
HMGA1-203ENST00000374116 ANKRD36CQ5JPF3 1778 aa17.67■□□□□ 0.42
HMGA1-203ENST00000374116 AFDNP55196 1824 aaKnown RBP17.67■□□□□ 0.42
HMGA1-203ENST00000374116 NUCB1Q02818 461 aa17.67■□□□□ 0.42
HMGA1-203ENST00000374116 SIRT2Q8IXJ6 389 aa17.67■□□□□ 0.42
HMGA1-203ENST00000374116 NPHP1O15259 732 aa17.66■□□□□ 0.42
HMGA1-203ENST00000374116 NLRP10Q86W26 655 aa17.66■□□□□ 0.42
HMGA1-203ENST00000374116 NBPF5PQ86XG9 351 aaPredicted RBP17.66■□□□□ 0.42
HMGA1-203ENST00000374116 GCC1Q96CN9 775 aa17.65■□□□□ 0.42
HMGA1-203ENST00000374116 ISCA1Q9BUE6 129 aa17.65■□□□□ 0.42
HMGA1-203ENST00000374116 ATP10DQ9P241 1426 aa17.65■□□□□ 0.42
HMGA1-203ENST00000374116 NEXNQ0ZGT2 675 aa17.65■□□□□ 0.42
HMGA1-203ENST00000374116 BEND3Q5T5X7 828 aa17.65■□□□□ 0.42
HMGA1-203ENST00000374116 CARMIL3Q8ND23 1372 aa17.65■□□□□ 0.42
HMGA1-203ENST00000374116 COL24A1Q17RW2 1714 aa17.64■□□□□ 0.42
HMGA1-203ENST00000374116 HSP90AB3PQ58FF7 597 aa17.64■□□□□ 0.41
HMGA1-203ENST00000374116 FAM89AQ96GI7 184 aa17.64■□□□□ 0.41
HMGA1-203ENST00000374116 NEURL1BA8MQ27 555 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 ERFEQ4G0M1 354 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 PRR5LQ6MZQ0 368 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 TRMT112Q9UI30 125 aaKnown RBP17.63■□□□□ 0.41
HMGA1-203ENST00000374116 WWC3Q9ULE0 1092 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 NTSR2O95665 410 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 GTF2E1P29083 439 aaPredicted RBP17.63■□□□□ 0.41
HMGA1-203ENST00000374116 SLC4A3P48751 1232 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 CNBD1Q8NA66 436 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 C1orf115Q9H7X2 142 aa17.63■□□□□ 0.41
HMGA1-203ENST00000374116 UTRNP46939 3433 aa17.62■□□□□ 0.41
HMGA1-203ENST00000374116 CHD1LQ86WJ1 897 aa17.62■□□□□ 0.41
HMGA1-203ENST00000374116 TBC1D32Q96NH3 1257 aa17.62■□□□□ 0.41
HMGA1-203ENST00000374116 BECN1Q14457 450 aa17.61■□□□□ 0.41
HMGA1-203ENST00000374116 TPTE2Q6XPS3 522 aa17.61■□□□□ 0.41
HMGA1-203ENST00000374116 PPP1R42Q7Z4L9 355 aa17.61■□□□□ 0.41
HMGA1-203ENST00000374116 UTP14AQ9BVJ6 771 aaKnown RBP17.61■□□□□ 0.41
HMGA1-203ENST00000374116 CWC25Q9NXE8 425 aaPredicted RBP17.61■□□□□ 0.41
HMGA1-203ENST00000374116 ABCC12Q96J65 1359 aa17.61■□□□□ 0.41
HMGA1-203ENST00000374116 HCLS1P14317 486 aaPredicted RBP17.61■□□□□ 0.41
HMGA1-203ENST00000374116 PARP10Q53GL7 1025 aa17.61■□□□□ 0.41
HMGA1-203ENST00000374116 LINS1Q8NG48 757 aa17.61■□□□□ 0.41
HMGA1-203ENST00000374116 FHDC1Q9C0D6 1143 aaPredicted RBP17.61■□□□□ 0.41
HMGA1-203ENST00000374116 SRCIN1Q9C0H9 1055 aa17.61■□□□□ 0.41
HMGA1-203ENST00000374116 RGL2O15211 777 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms