RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 TSG101Q99816 390 aa16.55■□□□□ 0.24
TRAF1-201ENST00000373887 ALDH1L2Q3SY69 923 aa16.55■□□□□ 0.24
TRAF1-201ENST00000373887 ANKRD13DQ6ZTN6 518 aa16.55■□□□□ 0.24
TRAF1-201ENST00000373887 SLF2Q8IX21 1173 aa16.55■□□□□ 0.24
TRAF1-201ENST00000373887 TRMT1Q9NXH9 659 aaKnown RBP16.55■□□□□ 0.24
TRAF1-201ENST00000373887 SIRT1Q96EB6 747 aa16.55■□□□□ 0.24
TRAF1-201ENST00000373887 CUL5Q93034 780 aa16.55■□□□□ 0.24
TRAF1-201ENST00000373887 IQCA1Q86XH1 822 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 JAG2Q9Y219 1238 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 RIMBP2O15034 1052 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 MAP9Q49MG5 647 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 CCDC152Q4G0S7 254 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 ATP10BO94823 1461 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 A2MP01023 1474 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 GCOM1H8Y6P7 765 aaPredicted RBP16.54■□□□□ 0.24
TRAF1-201ENST00000373887 MYZAPP0CAP1 466 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 MCM4P33991 863 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 COPS6Q7L5N1 327 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 DDX17Q92841 729 aaKnown RBP16.54■□□□□ 0.24
TRAF1-201ENST00000373887 NUP88Q99567 741 aaPredicted RBP16.54■□□□□ 0.24
TRAF1-201ENST00000373887 BTG4Q9NY30 223 aa16.54■□□□□ 0.24
TRAF1-201ENST00000373887 SMC1AQ14683 1233 aaKnown RBP16.54■□□□□ 0.24
TRAF1-201ENST00000373887 GPATCH8Q9UKJ3 1502 aaKnown RBP16.54■□□□□ 0.24
TRAF1-201ENST00000373887 ZSCAN12O43309 604 aa16.53■□□□□ 0.24
TRAF1-201ENST00000373887 SPDYE4A6NLX3 237 aa16.53■□□□□ 0.24
TRAF1-201ENST00000373887 TRIM27P14373 513 aa16.53■□□□□ 0.24
TRAF1-201ENST00000373887 NFATC2IPQ8NCF5 419 aa16.53■□□□□ 0.24
TRAF1-201ENST00000373887 MYO1BO43795 1136 aa16.53■□□□□ 0.24
TRAF1-201ENST00000373887 TOP1P11387 765 aaKnown RBP16.53■□□□□ 0.24
TRAF1-201ENST00000373887 TDRD12Q587J7 1177 aaKnown RBP16.53■□□□□ 0.24
TRAF1-201ENST00000373887 RRP9O43818 475 aaKnown RBP16.53■□□□□ 0.24
TRAF1-201ENST00000373887 HOOK3Q86VS8 718 aa16.53■□□□□ 0.24
TRAF1-201ENST00000373887 IL2RBP14784 551 aa16.52■□□□□ 0.24
TRAF1-201ENST00000373887 CTNNA2P26232 953 aa16.52■□□□□ 0.24
TRAF1-201ENST00000373887 TSPY2A6NKD2 308 aa16.52■□□□□ 0.24
TRAF1-201ENST00000373887 GOLGA8AA7E2F4 631 aa16.52■□□□□ 0.24
TRAF1-201ENST00000373887 GOLGA8BA8MQT2 603 aa16.52■□□□□ 0.24
TRAF1-201ENST00000373887 NLRP5P59047 1200 aa16.52■□□□□ 0.24
TRAF1-201ENST00000373887 CLIP2Q9UDT6 1046 aa16.52■□□□□ 0.23
TRAF1-201ENST00000373887 WDR7Q9Y4E6 1490 aa16.52■□□□□ 0.23
TRAF1-201ENST00000373887 PLCH2O75038 1416 aa16.52■□□□□ 0.23
TRAF1-201ENST00000373887 PPP4R3AQ6IN85 833 aa16.52■□□□□ 0.23
TRAF1-201ENST00000373887 BACH2Q9BYV9 841 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 SPTY2D1Q68D10 685 aaPredicted RBP16.51■□□□□ 0.23
TRAF1-201ENST00000373887 GTF2F1P35269 517 aaKnown RBP eCLIP16.51■□□□□ 0.23
TRAF1-201ENST00000373887 HLTFQ14527 1009 aaKnown RBP eCLIP16.51■□□□□ 0.23
TRAF1-201ENST00000373887 SPECC1Q5M775 1068 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 PPM1EQ8WY54 764 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 VEZTQ9HBM0 779 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 CABP5Q9NP86 173 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 UNC13AQ9UPW8 1703 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 KAT6BQ8WYB5 2073 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 KCNA6P17658 529 aa16.51■□□□□ 0.23
TRAF1-201ENST00000373887 NKTRP30414 1462 aaKnown RBP16.51■□□□□ 0.23
TRAF1-201ENST00000373887 DZIP3Q86Y13 1208 aaKnown RBP16.5■□□□□ 0.23
TRAF1-201ENST00000373887 TRAPPC8Q9Y2L5 1435 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 KIF18AQ8NI77 898 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 PARP3Q9Y6F1 533 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 TMCO5BA8MYB1 307 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 SSRP1Q08945 709 aaKnown RBP16.5■□□□□ 0.23
TRAF1-201ENST00000373887 PRPF4BQ13523 1007 aaKnown RBP16.5■□□□□ 0.23
TRAF1-201ENST00000373887 ABCC11Q96J66 1382 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 BAG3O95817 575 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 CATIPQ7Z7H3 387 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 VPS36Q86VN1 386 aa16.5■□□□□ 0.23
TRAF1-201ENST00000373887 SRRTQ9BXP5 876 aaKnown RBP16.5■□□□□ 0.23
TRAF1-201ENST00000373887 HLA-DOAP06340 250 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 ZSCAN30Q86W11 494 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 CGNQ9P2M7 1197 aaKnown RBP16.49■□□□□ 0.23
TRAF1-201ENST00000373887 PIK3R4Q99570 1358 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 CCDC175P0C221 793 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 PTPRCP08575 1304 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 ATP2C2O75185 946 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 POLD1P28340 1107 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 EIF4A2Q14240 407 aaKnown RBP16.49■□□□□ 0.23
TRAF1-201ENST00000373887 C19orf44Q9H6X5 657 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 ANO10Q9NW15 660 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 HELBQ8NG08 1087 aaPredicted RBP16.49■□□□□ 0.23
TRAF1-201ENST00000373887 NLRP3Q96P20 1036 aa16.49■□□□□ 0.23
TRAF1-201ENST00000373887 RTCBQ9Y3I0 505 aaKnown RBP16.49■□□□□ 0.23
TRAF1-201ENST00000373887 CKAP2LQ8IYA6 745 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 C8orf76Q96K31 380 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 C16orf45Q96MC5 204 aaPredicted RBP16.48■□□□□ 0.23
TRAF1-201ENST00000373887 SAMM50Q9Y512 469 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 PRKCSHP14314 528 aaPredicted RBP16.48■□□□□ 0.23
TRAF1-201ENST00000373887 MICALCLQ6ZW33 695 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 MAATS1Q7Z4T9 603 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 TMEM87AQ8NBN3 555 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 FAM107BQ9H098 131 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 GRIPAP1Q4V328 841 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 TMEM67Q5HYA8 995 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 FERMT2Q96AC1 680 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 DNAI2Q9GZS0 605 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 KAT14Q9H8E8 782 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 CCDC150Q8NCX0 1101 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 PAFAH1B1P43034 410 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 CTR9Q6PD62 1173 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 C16orf71Q8IYS4 520 aaPredicted RBP16.48■□□□□ 0.23
TRAF1-201ENST00000373887 HOMER2Q9NSB8 354 aa16.48■□□□□ 0.23
TRAF1-201ENST00000373887 ZNF518AQ6AHZ1 1483 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms