RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 HLFQ16534 295 aa13.71□□□□□ -0.21
CLRN3-201ENST00000368671 SOGA3Q5TF21 947 aa13.71□□□□□ -0.21
CLRN3-201ENST00000368671 TPTE2Q6XPS3 522 aa13.71□□□□□ -0.21
CLRN3-201ENST00000368671 DDNO94850 711 aaPredicted RBP13.7□□□□□ -0.22
CLRN3-201ENST00000368671 NPR1P16066 1061 aa13.7□□□□□ -0.22
CLRN3-201ENST00000368671 CCDC93Q567U6 631 aa13.7□□□□□ -0.22
CLRN3-201ENST00000368671 JMYQ8N9B5 988 aa13.7□□□□□ -0.22
CLRN3-201ENST00000368671 PNISRQ8TF01 805 aaKnown RBP13.7□□□□□ -0.22
CLRN3-201ENST00000368671 NUP98P52948 1817 aa13.69□□□□□ -0.22
CLRN3-201ENST00000368671 GTF2E1P29083 439 aaPredicted RBP13.69□□□□□ -0.22
CLRN3-201ENST00000368671 DCAF8Q5TAQ9 597 aa13.69□□□□□ -0.22
CLRN3-201ENST00000368671 KIF12Q96FN5 646 aa13.69□□□□□ -0.22
CLRN3-201ENST00000368671 THUMPD2Q9BTF0 503 aaKnown RBP13.69□□□□□ -0.22
CLRN3-201ENST00000368671 MAPK8IP3Q9UPT6 1336 aa13.68□□□□□ -0.22
CLRN3-201ENST00000368671 NFE2L2Q16236 605 aa13.68□□□□□ -0.22
CLRN3-201ENST00000368671 PLEKHF1Q96S99 279 aa13.68□□□□□ -0.22
CLRN3-201ENST00000368671 RRP7AQ9Y3A4 280 aaKnown RBP13.68□□□□□ -0.22
CLRN3-201ENST00000368671 RGL2O15211 777 aa13.67□□□□□ -0.22
CLRN3-201ENST00000368671 MYL6BP14649 208 aa13.67□□□□□ -0.22
CLRN3-201ENST00000368671 EIF4A1P60842 406 aaKnown RBP13.67□□□□□ -0.22
CLRN3-201ENST00000368671 FKBP4Q02790 459 aaKnown RBP eCLIP13.67□□□□□ -0.22
CLRN3-201ENST00000368671 OLFM4Q6UX06 510 aa13.67□□□□□ -0.22
CLRN3-201ENST00000368671 KIF6Q6ZMV9 814 aa13.67□□□□□ -0.22
CLRN3-201ENST00000368671 C7orf43Q8WVR3 580 aa13.67□□□□□ -0.22
CLRN3-201ENST00000368671 KLRG2A4D1S0 409 aaPredicted RBP13.66□□□□□ -0.22
CLRN3-201ENST00000368671 POTEIP0CG38 1075 aa13.66□□□□□ -0.22
CLRN3-201ENST00000368671 POTEJP0CG39 1038 aa13.66□□□□□ -0.22
CLRN3-201ENST00000368671 TTLL7Q6ZT98 887 aa13.66□□□□□ -0.22
CLRN3-201ENST00000368671 NUTM1Q86Y26 1132 aa13.66□□□□□ -0.22
CLRN3-201ENST00000368671 ZNF277Q9NRM2 450 aaPredicted RBP13.66□□□□□ -0.22
CLRN3-201ENST00000368671 ABCC12Q96J65 1359 aa13.66□□□□□ -0.22
CLRN3-201ENST00000368671 MAP3K15Q6ZN16 1313 aa13.65□□□□□ -0.22
CLRN3-201ENST00000368671 SCN4AP35499 1836 aa13.65□□□□□ -0.22
CLRN3-201ENST00000368671 GALR2O43603 387 aaPredicted RBP13.65□□□□□ -0.22
CLRN3-201ENST00000368671 GPTP24298 496 aa13.65□□□□□ -0.22
CLRN3-201ENST00000368671 ALDH1B1P30837 517 aa13.65□□□□□ -0.22
CLRN3-201ENST00000368671 NYXQ9GZU5 481 aa13.65□□□□□ -0.22
CLRN3-201ENST00000368671 PNNQ9H307 717 aaKnown RBP13.65□□□□□ -0.22
CLRN3-201ENST00000368671 ZBTB3Q9H5J0 574 aa13.65□□□□□ -0.22
CLRN3-201ENST00000368671 ZNF541Q9H0D2 1346 aa13.64□□□□□ -0.23
CLRN3-201ENST00000368671 IQCA1LA6NCM1 817 aa13.64□□□□□ -0.23
CLRN3-201ENST00000368671 ERVV-1B6SEH8 477 aa13.64□□□□□ -0.23
CLRN3-201ENST00000368671 COL13A1Q5TAT6 717 aaPredicted RBP13.64□□□□□ -0.23
CLRN3-201ENST00000368671 RTKN2Q8IZC4 609 aa13.64□□□□□ -0.23
CLRN3-201ENST00000368671 HSPA1AP0DMV8 641 aaKnown RBP13.63□□□□□ -0.23
CLRN3-201ENST00000368671 HSPA1BP0DMV9 641 aaKnown RBP13.63□□□□□ -0.23
CLRN3-201ENST00000368671 IARSP41252 1262 aaKnown RBP13.63□□□□□ -0.23
CLRN3-201ENST00000368671 SYNE4Q8N205 404 aa13.63□□□□□ -0.23
CLRN3-201ENST00000368671 MS4A3Q96HJ5 214 aa13.63□□□□□ -0.23
CLRN3-201ENST00000368671 TSPYL4Q9UJ04 414 aa13.63□□□□□ -0.23
CLRN3-201ENST00000368671 UBN2Q6ZU65 1347 aa13.63□□□□□ -0.23
CLRN3-201ENST00000368671 MAP3K13O43283 966 aa13.62□□□□□ -0.23
CLRN3-201ENST00000368671 EAPPQ56P03 285 aaPredicted RBP13.62□□□□□ -0.23
CLRN3-201ENST00000368671 SUSD4Q5VX71 490 aa13.62□□□□□ -0.23
CLRN3-201ENST00000368671 RPGRQ92834 1020 aaKnown RBP13.62□□□□□ -0.23
CLRN3-201ENST00000368671 L3MBTL3Q96JM7 780 aaPredicted RBP13.62□□□□□ -0.23
CLRN3-201ENST00000368671 TAF1DQ9H5J8 278 aaPredicted RBP13.62□□□□□ -0.23
CLRN3-201ENST00000368671 MKRN1Q9UHC7 482 aaKnown RBP13.62□□□□□ -0.23
CLRN3-201ENST00000368671 IBTKQ9P2D0 1353 aaPredicted RBP13.61□□□□□ -0.23
CLRN3-201ENST00000368671 EIF2S2P20042 333 aaKnown RBP13.61□□□□□ -0.23
CLRN3-201ENST00000368671 RIPK4P57078 832 aa13.61□□□□□ -0.23
CLRN3-201ENST00000368671 CRY2Q49AN0 593 aa13.61□□□□□ -0.23
CLRN3-201ENST00000368671 LDHDQ86WU2 507 aa13.61□□□□□ -0.23
CLRN3-201ENST00000368671 ANKRD36CQ5JPF3 1778 aa13.6□□□□□ -0.23
CLRN3-201ENST00000368671 TCERG1O14776 1098 aaKnown RBP13.6□□□□□ -0.23
CLRN3-201ENST00000368671 CHRM1P11229 460 aaPredicted RBP13.6□□□□□ -0.23
CLRN3-201ENST00000368671 RIC1Q4ADV7 1423 aa13.6□□□□□ -0.23
CLRN3-201ENST00000368671 GIGYF2Q6Y7W6 1299 aaKnown RBP13.6□□□□□ -0.23
CLRN3-201ENST00000368671 SNED1Q8TER0 1413 aa13.6□□□□□ -0.23
CLRN3-201ENST00000368671 HACL1Q9UJ83 578 aa13.6□□□□□ -0.23
CLRN3-201ENST00000368671 CIZ1Q9ULV3 898 aaPredicted RBP13.6□□□□□ -0.23
CLRN3-201ENST00000368671 ERBB4Q15303 1308 aa13.6□□□□□ -0.23
CLRN3-201ENST00000368671 RNF123Q5XPI4 1314 aa13.6□□□□□ -0.23
CLRN3-201ENST00000368671 ADAMTSL1Q8N6G6 1762 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 NTSR2O95665 410 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 EPHX2P34913 555 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 PPP1R42Q7Z4L9 355 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 ZNF34Q8IZ26 560 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 TNS4Q8IZW8 715 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 JDP2Q8WYK2 163 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 PSMD1Q99460 953 aa13.59□□□□□ -0.23
CLRN3-201ENST00000368671 FZD9O00144 591 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 PPEF1O14829 653 aaPredicted RBP13.58□□□□□ -0.24
CLRN3-201ENST00000368671 ANXA1P04083 346 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 PYGBP11216 843 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 RALBP1Q15311 655 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 CC2D2BQ6DHV5 1058 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 SLC51AQ86UW1 340 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 NECTIN2Q92692 538 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 RBM17Q96I25 401 aaKnown RBP13.58□□□□□ -0.24
CLRN3-201ENST00000368671 GJA3Q9Y6H8 435 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 COL4A5P29400 1685 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 LAMB2P55268 1798 aa13.58□□□□□ -0.24
CLRN3-201ENST00000368671 HOXA10P31260 410 aaPredicted RBP13.57□□□□□ -0.24
CLRN3-201ENST00000368671 TMPOP42166 694 aaKnown RBP13.57□□□□□ -0.24
CLRN3-201ENST00000368671 EIF6P56537 245 aaKnown RBP13.57□□□□□ -0.24
CLRN3-201ENST00000368671 LMOD3Q0VAK6 560 aa13.57□□□□□ -0.24
CLRN3-201ENST00000368671 PDIA6Q15084 440 aa13.57□□□□□ -0.24
CLRN3-201ENST00000368671 PROSER3Q2NL68 480 aa13.57□□□□□ -0.24
CLRN3-201ENST00000368671 PARP10Q53GL7 1025 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms