RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 HSP90AB2PQ58FF8 381 aa9.57□□□□□ -0.88
ZNF540-202ENST00000343599 HACL1Q9UJ83 578 aa9.57□□□□□ -0.88
ZNF540-202ENST00000343599 PER1O15534 1290 aaPredicted RBP9.57□□□□□ -0.88
ZNF540-202ENST00000343599 GNRH1P01148 92 aa9.57□□□□□ -0.88
ZNF540-202ENST00000343599 TAOK3Q9H2K8 898 aa9.57□□□□□ -0.88
ZNF540-202ENST00000343599 TAF1DQ9H5J8 278 aaPredicted RBP9.57□□□□□ -0.88
ZNF540-202ENST00000343599 USP35Q9P2H5 1018 aa9.57□□□□□ -0.88
ZNF540-202ENST00000343599 COL2A1P02458 1487 aaPredicted RBP9.56□□□□□ -0.88
ZNF540-202ENST00000343599 AAMPQ13685 434 aa9.56□□□□□ -0.88
ZNF540-202ENST00000343599 NGEFQ8N5V2 710 aa9.56□□□□□ -0.88
ZNF540-202ENST00000343599 MAST2Q6P0Q8 1798 aa9.56□□□□□ -0.88
ZNF540-202ENST00000343599 SERPINB2P05120 415 aa9.56□□□□□ -0.88
ZNF540-202ENST00000343599 INTS3Q68E01 1043 aaKnown RBP9.55□□□□□ -0.88
ZNF540-202ENST00000343599 TNS4Q8IZW8 715 aa9.55□□□□□ -0.88
ZNF540-202ENST00000343599 MYO3BQ8WXR4 1341 aa9.55□□□□□ -0.88
ZNF540-202ENST00000343599 NFIXQ14938 502 aa9.55□□□□□ -0.88
ZNF540-202ENST00000343599 DDX54Q8TDD1 881 aaKnown RBP9.55□□□□□ -0.88
ZNF540-202ENST00000343599 BBOX1O75936 387 aa9.54□□□□□ -0.88
ZNF540-202ENST00000343599 HSPA1AP0DMV8 641 aaKnown RBP9.54□□□□□ -0.88
ZNF540-202ENST00000343599 HSPA1BP0DMV9 641 aaKnown RBP9.54□□□□□ -0.88
ZNF540-202ENST00000343599 MAP3K11Q16584 847 aa9.54□□□□□ -0.88
ZNF540-202ENST00000343599 CCDC102AQ96A19 550 aa9.54□□□□□ -0.88
ZNF540-202ENST00000343599 MTHFSP49914 203 aa9.54□□□□□ -0.88
ZNF540-202ENST00000343599 MTMR14Q8NCE2 650 aa9.54□□□□□ -0.88
ZNF540-202ENST00000343599 LOC285556D6RIA3 1793 aa9.54□□□□□ -0.88
ZNF540-202ENST00000343599 ADARB2Q9NS39 739 aaKnown RBP9.54□□□□□ -0.88
ZNF540-202ENST00000343599 PDIA4P13667 645 aaKnown RBP9.53□□□□□ -0.88
ZNF540-202ENST00000343599 ZNF530Q6P9A1 599 aaPredicted RBP9.53□□□□□ -0.88
ZNF540-202ENST00000343599 TMED8Q6PL24 325 aaPredicted RBP9.53□□□□□ -0.88
ZNF540-202ENST00000343599 SP8Q8IXZ3 490 aa9.53□□□□□ -0.88
ZNF540-202ENST00000343599 GNAT3A8MTJ3 354 aa9.53□□□□□ -0.88
ZNF540-202ENST00000343599 INHBEP58166 350 aa9.53□□□□□ -0.88
ZNF540-202ENST00000343599 EIF4G2P78344 907 aaKnown RBP eCLIP9.53□□□□□ -0.88
ZNF540-202ENST00000343599 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.53□□□□□ -0.88
ZNF540-202ENST00000343599 CNKSR2Q8WXI2 1034 aa9.53□□□□□ -0.88
ZNF540-202ENST00000343599 ASAP1Q9ULH1 1129 aa9.53□□□□□ -0.88
ZNF540-202ENST00000343599 KIF16BQ96L93 1317 aa9.53□□□□□ -0.88
ZNF540-202ENST00000343599 RBM10P98175 930 aaKnown RBP9.52□□□□□ -0.88
ZNF540-202ENST00000343599 ZNF34Q8IZ26 560 aa9.52□□□□□ -0.88
ZNF540-202ENST00000343599 IPO9Q96P70 1041 aaKnown RBP9.52□□□□□ -0.88
ZNF540-202ENST00000343599 RNF181Q9P0P0 153 aa9.52□□□□□ -0.88
ZNF540-202ENST00000343599 WWC3Q9ULE0 1092 aa9.52□□□□□ -0.88
ZNF540-202ENST00000343599 LMOD3Q0VAK6 560 aa9.52□□□□□ -0.89
ZNF540-202ENST00000343599 TNIP1Q15025 636 aa9.52□□□□□ -0.89
ZNF540-202ENST00000343599 PRR5LQ6MZQ0 368 aa9.52□□□□□ -0.89
ZNF540-202ENST00000343599 C2CD5Q86YS7 1000 aa9.52□□□□□ -0.89
ZNF540-202ENST00000343599 SNRPA1P09661 255 aaKnown RBP9.52□□□□□ -0.89
ZNF540-202ENST00000343599 IARSP41252 1262 aaKnown RBP9.52□□□□□ -0.89
ZNF540-202ENST00000343599 ZNF280AP59817 542 aaPredicted RBP9.52□□□□□ -0.89
ZNF540-202ENST00000343599 TESPA1A2RU30 521 aaPredicted RBP9.51□□□□□ -0.89
ZNF540-202ENST00000343599 FAM43AQ8N2R8 423 aa9.51□□□□□ -0.89
ZNF540-202ENST00000343599 PRPF38BQ5VTL8 546 aaKnown RBP9.51□□□□□ -0.89
ZNF540-202ENST00000343599 RBM17Q96I25 401 aaKnown RBP9.51□□□□□ -0.89
ZNF540-202ENST00000343599 ALDH1A1P00352 501 aa9.5□□□□□ -0.89
ZNF540-202ENST00000343599 ZNF790Q6PG37 636 aa9.5□□□□□ -0.89
ZNF540-202ENST00000343599 ARHGAP27Q6ZUM4 889 aa9.5□□□□□ -0.89
ZNF540-202ENST00000343599 BRPF3Q9ULD4 1205 aa9.5□□□□□ -0.89
ZNF540-202ENST00000343599 WDR33Q9C0J8 1336 aaKnown RBP9.5□□□□□ -0.89
ZNF540-202ENST00000343599 MAP4K4O95819 1239 aaPredicted RBP9.5□□□□□ -0.89
ZNF540-202ENST00000343599 NOGQ13253 232 aa9.5□□□□□ -0.89
ZNF540-202ENST00000343599 TPTE2Q6XPS3 522 aa9.5□□□□□ -0.89
ZNF540-202ENST00000343599 OTOFQ9HC10 1997 aa9.5□□□□□ -0.89
ZNF540-202ENST00000343599 SF3B3Q15393 1217 aaKnown RBP9.5□□□□□ -0.89
ZNF540-202ENST00000343599 ARIH1Q9Y4X5 557 aaPredicted RBP9.5□□□□□ -0.89
ZNF540-202ENST00000343599 MAP3K15Q6ZN16 1313 aa9.49□□□□□ -0.89
ZNF540-202ENST00000343599 AGBL3Q8NEM8 1001 aa9.49□□□□□ -0.89
ZNF540-202ENST00000343599 MRIQ9BWK5 157 aa9.49□□□□□ -0.89
ZNF540-202ENST00000343599 FOCADQ5VW36 1801 aa9.49□□□□□ -0.89
ZNF540-202ENST00000343599 COL4A5P29400 1685 aa9.49□□□□□ -0.89
ZNF540-202ENST00000343599 MPRIPQ6WCQ1 1025 aa9.49□□□□□ -0.89
ZNF540-202ENST00000343599 ATP6V0A2Q9Y487 856 aa9.49□□□□□ -0.89
ZNF540-202ENST00000343599 MGAMO43451 1857 aa9.48□□□□□ -0.89
ZNF540-202ENST00000343599 DIAPH1O60610 1272 aaKnown RBP9.48□□□□□ -0.89
ZNF540-202ENST00000343599 TM4SF4P48230 202 aa9.48□□□□□ -0.89
ZNF540-202ENST00000343599 TMC1Q8TDI8 760 aa9.48□□□□□ -0.89
ZNF540-202ENST00000343599 PIAS4Q8N2W9 510 aaPredicted RBP9.48□□□□□ -0.89
ZNF540-202ENST00000343599 AMIGO3Q86WK7 504 aa9.47□□□□□ -0.89
ZNF540-202ENST00000343599 CFAP53Q96M91 514 aa9.47□□□□□ -0.89
ZNF540-202ENST00000343599 EMILIN1Q9Y6C2 1016 aa9.47□□□□□ -0.89
ZNF540-202ENST00000343599 TBC1D2Q9BYX2 928 aa9.47□□□□□ -0.89
ZNF540-202ENST00000343599 RRAGCQ9HB90 399 aa9.47□□□□□ -0.89
ZNF540-202ENST00000343599 PPP4R2Q9NY27 417 aa9.47□□□□□ -0.89
ZNF540-202ENST00000343599 RRP9O43818 475 aaKnown RBP9.47□□□□□ -0.89
ZNF540-202ENST00000343599 ECM2O94769 699 aaPredicted RBP9.47□□□□□ -0.89
ZNF540-202ENST00000343599 CNBD1Q8NA66 436 aa9.47□□□□□ -0.89
ZNF540-202ENST00000343599 KIAA2012Q0VF49 1180 aa9.46□□□□□ -0.89
ZNF540-202ENST00000343599 NEUROD2Q15784 382 aa9.46□□□□□ -0.89
ZNF540-202ENST00000343599 DEFB115Q30KQ5 88 aa9.46□□□□□ -0.89
ZNF540-202ENST00000343599 LRP10Q7Z4F1 713 aa9.46□□□□□ -0.89
ZNF540-202ENST00000343599 PPP1R42Q7Z4L9 355 aa9.46□□□□□ -0.89
ZNF540-202ENST00000343599 SETDB2Q96T68 719 aa9.46□□□□□ -0.89
ZNF540-202ENST00000343599 NMRK2Q9NPI5 230 aa9.46□□□□□ -0.89
ZNF540-202ENST00000343599 MED23Q9ULK4 1368 aa9.46□□□□□ -0.9
ZNF540-202ENST00000343599 A0A0U1RQG5 324 aaPredicted RBP9.46□□□□□ -0.9
ZNF540-202ENST00000343599 EPHX2P34913 555 aa9.46□□□□□ -0.9
ZNF540-202ENST00000343599 ARHGEF6Q15052 776 aa9.46□□□□□ -0.9
ZNF540-202ENST00000343599 PLA2G12BQ9BX93 195 aa9.46□□□□□ -0.9
ZNF540-202ENST00000343599 GGNBP2Q9H3C7 697 aa9.46□□□□□ -0.9
ZNF540-202ENST00000343599 DDX21Q9NR30 783 aaKnown RBP eCLIP9.46□□□□□ -0.9
ZNF540-202ENST00000343599 ZBTB47Q9UFB7 747 aaPredicted RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms