RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 USPL1Q5W0Q7 1092 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 C1orf228Q6PIY5 440 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 NUP133Q8WUM0 1156 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 GTF3C6Q969F1 213 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 SYCP1Q15431 976 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 MAP3K11Q16584 847 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 SECISBP2LQ93073 1101 aaKnown RBP9.94□□□□□ -0.82
HMGB1-203ENST00000341423 CCDC69A6NI79 296 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 UQCRFS1P1P0C7P4 283 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 APOBEC3FQ8IUX4 373 aaKnown RBP9.94□□□□□ -0.82
HMGB1-203ENST00000341423 NLRP1Q9C000 1473 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 IRS4O14654 1257 aaPredicted RBP9.94□□□□□ -0.82
HMGB1-203ENST00000341423 GINS2Q9Y248 185 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 COG6Q9Y2V7 657 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 KIF21BO75037 1637 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 MCTP1Q6DN14 999 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 TRIM17Q9Y577 477 aa9.94□□□□□ -0.82
HMGB1-203ENST00000341423 CEP170Q5SW79 1584 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 ATP2B4P23634 1241 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 PLCB2Q00722 1185 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 RAB3GAP1Q15042 981 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 ZKSCAN2Q63HK3 967 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 CSPG5O95196 566 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 SLC39A6Q13433 755 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 UPF1Q92900 1129 aaKnown RBP eCLIP9.93□□□□□ -0.821e-11■■■□□ 16.8
HMGB1-203ENST00000341423 PTPRTO14522 1441 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 HIP1O00291 1037 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 LIG1P18858 919 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 NOGQ13253 232 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 TTLL7Q6ZT98 887 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 ANKRD20A12PQ8NF67 263 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 TEKT1Q969V4 418 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 CFAP43Q8NDM7 1665 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 CCDC155Q8N6L0 562 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 CCDC150Q8NCX0 1101 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 MYBBP1AQ9BQG0 1328 aaKnown RBP9.93□□□□□ -0.82
HMGB1-203ENST00000341423 NOS1P29475 1434 aa9.93□□□□□ -0.82
HMGB1-203ENST00000341423 BBOX1O75936 387 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 GPR101Q96P66 508 aaPredicted RBP9.92□□□□□ -0.82
HMGB1-203ENST00000341423 NAPBQ9H115 298 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 C14orf93Q9H972 538 aaKnown RBP9.92□□□□□ -0.82
HMGB1-203ENST00000341423 CTNNA3Q9UI47 895 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 KIAA0232Q92628 1395 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 ATP10BO94823 1461 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 UGGT1Q9NYU2 1555 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 BCAMP50895 628 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 SMC1AQ14683 1233 aaKnown RBP9.92□□□□□ -0.82
HMGB1-203ENST00000341423 KIAA1841Q6NSI8 718 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 NCAPG2Q86XI2 1143 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 NUP160Q12769 1436 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 CHADLQ6NUI6 762 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 CD2APQ9Y5K6 639 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 A0A0G2JLW4 131 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 EVI5O60447 810 aa9.92□□□□□ -0.82
HMGB1-203ENST00000341423 SSBP05455 408 aaKnown RBP eCLIP9.92□□□□□ -0.82
HMGB1-203ENST00000341423 TRMT1LQ7Z2T5 733 aaKnown RBP9.92□□□□□ -0.82
HMGB1-203ENST00000341423 RBM28Q9NW13 759 aaKnown RBP9.92□□□□□ -0.82
HMGB1-203ENST00000341423 DCDC2CA8MYV0 355 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 BACH1O14867 736 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 TWISTNBQ3B726 338 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 B4GALNT3Q6L9W6 998 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 PCMTD1Q96MG8 357 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 RNF41Q9H4P4 317 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 MSRAQ9UJ68 235 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 RANBP6O60518 1105 aaKnown RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 TOMM70O94826 608 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 CCT4P50991 539 aaKnown RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 TBC1D10BQ4KMP7 808 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 CCDC178Q5BJE1 867 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 ERVV-2B6SEH9 535 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 TTF1Q15361 905 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 NAA16Q6N069 864 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 CERS3Q8IU89 383 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 CTCFLQ8NI51 663 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-203ENST00000341423 TRIM47Q96LD4 638 aa9.91□□□□□ -0.82
HMGB1-203ENST00000341423 OFD1O75665 1012 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 TRPA1O75762 1119 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 ODR4Q5SWX8 454 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 KIAA0825Q8IV33 1275 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 PIDD1Q9HB75 910 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 HOOK1Q9UJC3 728 aaKnown RBP9.9□□□□□ -0.82
HMGB1-203ENST00000341423 WDR66Q8TBY9 1149 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 TRIM6Q9C030 488 aaPredicted RBP9.9□□□□□ -0.82
HMGB1-203ENST00000341423 PNMA2Q9UL42 364 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 SUPT16HQ9Y5B9 1047 aaKnown RBP9.9□□□□□ -0.82
HMGB1-203ENST00000341423 TSPY2A6NKD2 308 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 ARID5AQ03989 594 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 DNAJC10Q8IXB1 793 aa9.9□□□□□ -0.82
HMGB1-203ENST00000341423 ZHX1Q9UKY1 873 aaPredicted RBP9.9□□□□□ -0.82
HMGB1-203ENST00000341423 USP17L8P0C7I0 530 aa9.9□□□□□ -0.83
HMGB1-203ENST00000341423 TGFB2P61812 414 aa9.9□□□□□ -0.83
HMGB1-203ENST00000341423 AZI2Q9H6S1 392 aa9.9□□□□□ -0.83
HMGB1-203ENST00000341423 CDK13Q14004 1512 aaKnown RBP9.9□□□□□ -0.83
HMGB1-203ENST00000341423 PIK3R4Q99570 1358 aa9.9□□□□□ -0.83
HMGB1-203ENST00000341423 HIBADHP31937 336 aaKnown RBP9.89□□□□□ -0.83
HMGB1-203ENST00000341423 FCGRTP55899 365 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 GTF2IP78347 998 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 CHAMP1Q96JM3 812 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 CUL7Q14999 1698 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 EHBP1L1Q8N3D4 1523 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms