RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 PRPF40BQ6NWY9 871 aaKnown RBP17.49■□□□□ 0.39
TDP2-201ENST00000341060 SNRKQ9NRH2 765 aa17.49■□□□□ 0.39
TDP2-201ENST00000341060 STX6O43752 255 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 CPA1P15085 419 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 TATP17735 454 aaPredicted RBP17.48■□□□□ 0.39
TDP2-201ENST00000341060 GCKRQ14397 625 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 USP48Q86UV5 1035 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 JAKMIP1Q96N16 626 aaKnown RBP17.48■□□□□ 0.39
TDP2-201ENST00000341060 NLRP2Q9NX02 1062 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 SYT1P21579 422 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 NFATC2IPQ8NCF5 419 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 NAP1L5Q96NT1 182 aaPredicted RBP17.48■□□□□ 0.39
TDP2-201ENST00000341060 GDPD2Q9HCC8 539 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 SH2B1Q9NRF2 756 aaPredicted RBP17.48■□□□□ 0.39
TDP2-201ENST00000341060 SMC3Q9UQE7 1217 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 CYP46A1Q9Y6A2 500 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 GLI3P10071 1580 aa17.48■□□□□ 0.39
TDP2-201ENST00000341060 PHF14O94880 888 aa17.47■□□□□ 0.39
TDP2-201ENST00000341060 LARGE1O95461 756 aa17.47■□□□□ 0.39
TDP2-201ENST00000341060 MYL6BP14649 208 aa17.47■□□□□ 0.39
TDP2-201ENST00000341060 FOXD4L6Q3SYB3 417 aaPredicted RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 FOXD4L3Q6VB84 417 aaPredicted RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 XAGE3Q8WTP9 111 aa17.47■□□□□ 0.39
TDP2-201ENST00000341060 MAP4K1Q92918 833 aa17.47■□□□□ 0.39
TDP2-201ENST00000341060 ZSCAN31Q96LW9 406 aaPredicted RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 METTL22Q9BUU2 404 aaPredicted RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 PDRG1Q9NUG6 133 aa17.47■□□□□ 0.39
TDP2-201ENST00000341060 GADD45BO75293 160 aaPredicted RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 ZKSCAN1P17029 563 aaPredicted RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 IFNL2Q8IZJ0 200 aa17.47■□□□□ 0.39
TDP2-201ENST00000341060 LARP6Q9BRS8 491 aaKnown RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 CCDC8Q9H0W5 538 aaPredicted RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 TLR7Q9NYK1 1049 aaKnown RBP17.47■□□□□ 0.39
TDP2-201ENST00000341060 AEBP2Q6ZN18 517 aaPredicted RBP17.46■□□□□ 0.39
TDP2-201ENST00000341060 COPS6Q7L5N1 327 aa17.46■□□□□ 0.39
TDP2-201ENST00000341060 LRP10Q7Z4F1 713 aa17.46■□□□□ 0.39
TDP2-201ENST00000341060 ZNF496Q96IT1 587 aaPredicted RBP17.46■□□□□ 0.39
TDP2-201ENST00000341060 FAM227BQ96M60 508 aa17.46■□□□□ 0.39
TDP2-201ENST00000341060 SIL1Q9H173 461 aa17.46■□□□□ 0.39
TDP2-201ENST00000341060 RBM8AQ9Y5S9 174 aaKnown RBP17.46■□□□□ 0.39
TDP2-201ENST00000341060 F13A1P00488 732 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 MSNP26038 577 aaKnown RBP17.45■□□□□ 0.38
TDP2-201ENST00000341060 NMIQ13287 307 aaPredicted RBP17.45■□□□□ 0.38
TDP2-201ENST00000341060 TSPY26PQ9H489 355 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 ATP6V1DQ9Y5K8 247 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 CREB3L3Q68CJ9 461 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 MYD88Q99836 296 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 CNPY2Q9Y2B0 182 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 COL15A1P39059 1388 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 JCADQ9P266 1359 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 MED23Q9ULK4 1368 aa17.45■□□□□ 0.38
TDP2-201ENST00000341060 ANKRD13DQ6ZTN6 518 aa17.44■□□□□ 0.38
TDP2-201ENST00000341060 KLHDC4Q8TBB5 520 aa17.44■□□□□ 0.38
TDP2-201ENST00000341060 DCAF5Q96JK2 942 aa17.44■□□□□ 0.38
TDP2-201ENST00000341060 SNRPA1P09661 255 aaKnown RBP17.44■□□□□ 0.38
TDP2-201ENST00000341060 GJB2P29033 226 aa17.44■□□□□ 0.38
TDP2-201ENST00000341060 EPHA10Q5JZY3 1008 aa17.44■□□□□ 0.38
TDP2-201ENST00000341060 CCDC83Q8IWF9 413 aa17.44■□□□□ 0.38
TDP2-201ENST00000341060 COPRSQ9NQ92 184 aa17.44■□□□□ 0.38
TDP2-201ENST00000341060 NOL7Q9UMY1 257 aaKnown RBP17.44■□□□□ 0.38
TDP2-201ENST00000341060 LTBP4Q8N2S1 1624 aa17.43■□□□□ 0.38
TDP2-201ENST00000341060 A0A0D9SFI3 127 aa17.43■□□□□ 0.38
TDP2-201ENST00000341060 TTC5Q8N0Z6 440 aa17.43■□□□□ 0.38
TDP2-201ENST00000341060 CABLES1Q8TDN4 633 aa17.43■□□□□ 0.38
TDP2-201ENST00000341060 FSD1Q9BTV5 496 aa17.43■□□□□ 0.38
TDP2-201ENST00000341060 BOLA2Q9H3K6 86 aa17.43■□□□□ 0.38
TDP2-201ENST00000341060 TNS3Q68CZ2 1445 aa17.43■□□□□ 0.38
TDP2-201ENST00000341060 NUP188Q5SRE5 1749 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 KCNJ4P48050 445 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 UBE2HP62256 183 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 USP16Q9Y5T5 823 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 UBR2Q8IWV8 1755 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 SLC27A2O14975 620 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 PSMA5P28066 241 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 ST3GAL1Q11201 340 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 ME3Q16798 604 aa17.42■□□□□ 0.38
TDP2-201ENST00000341060 CYP27B1O15528 508 aa17.41■□□□□ 0.38
TDP2-201ENST00000341060 RABL6Q3YEC7 729 aaPredicted RBP17.41■□□□□ 0.38
TDP2-201ENST00000341060 RNF20Q5VTR2 975 aa17.41■□□□□ 0.38
TDP2-201ENST00000341060 RNF214Q8ND24 703 aa17.41■□□□□ 0.38
TDP2-201ENST00000341060 FMNL2Q96PY5 1086 aa17.41■□□□□ 0.38
TDP2-201ENST00000341060 SPATA31A3Q5VYP0 1347 aa17.41■□□□□ 0.38
TDP2-201ENST00000341060 RFX5P48382 616 aaPredicted RBP17.41■□□□□ 0.38
TDP2-201ENST00000341060 CCDC183Q5T5S1 534 aa17.41■□□□□ 0.38
TDP2-201ENST00000341060 MTMR6Q9Y217 621 aa17.41■□□□□ 0.38
TDP2-201ENST00000341060 CSB-PGBD3P0DP91 1061 aa17.4■□□□□ 0.38
TDP2-201ENST00000341060 FAM184AQ8NB25 1140 aa17.4■□□□□ 0.38
TDP2-201ENST00000341060 RFX7Q2KHR2 1363 aa17.4■□□□□ 0.38
TDP2-201ENST00000341060 PDIA4P13667 645 aaKnown RBP17.39■□□□□ 0.38
TDP2-201ENST00000341060 PTPN12Q05209 780 aaKnown RBP17.39■□□□□ 0.38
TDP2-201ENST00000341060 HMG20BQ9P0W2 317 aa17.39■□□□□ 0.38
TDP2-201ENST00000341060 TPCN1Q9ULQ1 816 aa17.39■□□□□ 0.38
TDP2-201ENST00000341060 TJP1Q07157 1748 aa17.39■□□□□ 0.37
TDP2-201ENST00000341060 LAMA4Q16363 1823 aa17.39■□□□□ 0.37
TDP2-201ENST00000341060 LETM1O95202 739 aaPredicted RBP17.39■□□□□ 0.37
TDP2-201ENST00000341060 ATP5JP18859 108 aa17.39■□□□□ 0.37
TDP2-201ENST00000341060 CSPP1Q1MSJ5 1256 aa17.39■□□□□ 0.37
TDP2-201ENST00000341060 KLHL34Q8N239 644 aa17.39■□□□□ 0.37
TDP2-201ENST00000341060 ALDH8A1Q9H2A2 487 aaPredicted RBP17.39■□□□□ 0.37
TDP2-201ENST00000341060 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms