RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 RBM42Q9BTD8 480 aaKnown RBP6.85□□□□□ -1.31
CSDE1-202ENST00000339438 PCDH11XQ9BZA7 1347 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 PCDH11YQ9BZA8 1340 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 APAF1O14727 1248 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 FAM98CQ17RN3 349 aaKnown RBP6.85□□□□□ -1.31
CSDE1-202ENST00000339438 LINC00116Q8NCU8 138 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 RBM27Q9P2N5 1060 aaKnown RBP6.85□□□□□ -1.31
CSDE1-202ENST00000339438 ATAD5Q96QE3 1844 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 K7ELQ4 463 aaPredicted RBP6.84□□□□□ -1.31
CSDE1-202ENST00000339438 IL2RBP14784 551 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 CCDC146Q8IYE0 955 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 RLFQ13129 1914 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 ERVV-2B6SEH9 535 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 SOX12O15370 315 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 MMP14P50281 582 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 HDAC1Q13547 482 aaPredicted RBP6.84□□□□□ -1.31
CSDE1-202ENST00000339438 MTHFSDQ2M296 383 aaKnown RBP6.84□□□□□ -1.31
CSDE1-202ENST00000339438 SECISBP2LQ93073 1101 aaKnown RBP6.84□□□□□ -1.31
CSDE1-202ENST00000339438 CTNNA3Q9UI47 895 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 KNSTRNQ9Y448 316 aa6.84□□□□□ -1.31
CSDE1-202ENST00000339438 PLXNB2O15031 1838 aa6.84□□□□□ -1.32
CSDE1-202ENST00000339438 PRELPP51888 382 aa6.84□□□□□ -1.32
CSDE1-202ENST00000339438 ZC3H6P61129 1189 aaKnown RBP6.84□□□□□ -1.32
CSDE1-202ENST00000339438 KIAA2012Q0VF49 1180 aa6.84□□□□□ -1.32
CSDE1-202ENST00000339438 NOLC1Q14978 699 aaKnown RBP eCLIP6.84□□□□□ -1.322e-7■□□□□ 10.8
CSDE1-202ENST00000339438 WWC1Q8IX03 1113 aa6.84□□□□□ -1.32
CSDE1-202ENST00000339438 RNF216Q9NWF9 866 aaPredicted RBP6.84□□□□□ -1.32
CSDE1-202ENST00000339438 TM4SF1P30408 202 aa6.83□□□□□ -1.32
CSDE1-202ENST00000339438 CDCA8Q53HL2 280 aa6.83□□□□□ -1.32
CSDE1-202ENST00000339438 GABPB1Q06547 395 aaPredicted RBP6.83□□□□□ -1.32
CSDE1-202ENST00000339438 NUTM2GQ5VZR2 741 aa6.83□□□□□ -1.32
CSDE1-202ENST00000339438 C14orf37Q86TY3 774 aa6.83□□□□□ -1.32
CSDE1-202ENST00000339438 C17orf53Q8N3J3 647 aaPredicted RBP6.83□□□□□ -1.32
CSDE1-202ENST00000339438 FEZ1Q99689 392 aa6.83□□□□□ -1.32
CSDE1-202ENST00000339438 KIF3AQ9Y496 699 aa6.83□□□□□ -1.32
CSDE1-202ENST00000339438 HTATSF1O43719 755 aaKnown RBP6.83□□□□□ -1.32
CSDE1-202ENST00000339438 PDCL2Q8N4E4 241 aa6.83□□□□□ -1.32
CSDE1-202ENST00000339438 NGDNQ8NEJ9 315 aaKnown RBP6.83□□□□□ -1.32
CSDE1-202ENST00000339438 SOS1Q07889 1333 aaPredicted RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 ADAMTS2O95450 1211 aa6.82□□□□□ -1.32
CSDE1-202ENST00000339438 RC3H1Q5TC82 1133 aaKnown RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 OGFRQ9NZT2 677 aa6.82□□□□□ -1.32
CSDE1-202ENST00000339438 MORC2Q9Y6X9 1032 aaPredicted RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 CENPFP49454 3210 aa6.82□□□□□ -1.32
CSDE1-202ENST00000339438 NCBP1Q09161 790 aaKnown RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 TERF2Q15554 542 aa6.82□□□□□ -1.32
CSDE1-202ENST00000339438 EZH2Q15910 746 aaKnown RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 FAM196AQ6ZSG2 479 aa6.82□□□□□ -1.32
CSDE1-202ENST00000339438 RWDD1Q9H446 243 aaPredicted RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 DDX41Q9UJV9 622 aaKnown RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 MVPQ14764 893 aaKnown RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 HDGFL2Q7Z4V5 671 aaPredicted RBP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.82□□□□□ -1.32
CSDE1-202ENST00000339438 CHAMP1Q96JM3 812 aa6.82□□□□□ -1.32
CSDE1-202ENST00000339438 TCHHQ07283 1943 aa6.82□□□□□ -1.32
CSDE1-202ENST00000339438 PSEN1P49768 467 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 NFATC2IPQ8NCF5 419 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 FOXD4L1Q9NU39 408 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 MTHFSP49914 203 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 MCTP1Q6DN14 999 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 CARMIL3Q8ND23 1372 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 SYCE3A1L190 88 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 RIOK3O14730 519 aaKnown RBP6.81□□□□□ -1.32
CSDE1-202ENST00000339438 KCNJ4P48050 445 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 SLC27A3Q5K4L6 730 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 DNAJC2Q99543 621 aaKnown RBP6.81□□□□□ -1.32
CSDE1-202ENST00000339438 KCNF1Q9H3M0 494 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 BABAM1Q9NWV8 329 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 PALLDQ8WX93 1383 aa6.81□□□□□ -1.32
CSDE1-202ENST00000339438 WDR43Q15061 677 aaKnown RBP eCLIP6.8□□□□□ -1.32
CSDE1-202ENST00000339438 LGR6Q9HBX8 967 aa6.8□□□□□ -1.32
CSDE1-202ENST00000339438 FRMPD3Q5JV73 1810 aa6.8□□□□□ -1.32
CSDE1-202ENST00000339438 BRPF1P55201 1214 aaPredicted RBP6.8□□□□□ -1.32
CSDE1-202ENST00000339438 NUCB1Q02818 461 aa6.8□□□□□ -1.32
CSDE1-202ENST00000339438 COG3Q96JB2 828 aa6.8□□□□□ -1.32
CSDE1-202ENST00000339438 LRRC37A2A6NM11 1700 aa6.8□□□□□ -1.32
CSDE1-202ENST00000339438 KIF16BQ96L93 1317 aa6.8□□□□□ -1.32
CSDE1-202ENST00000339438 CYP19A1P11511 503 aaPredicted RBP6.79□□□□□ -1.32
CSDE1-202ENST00000339438 SYCP1Q15431 976 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 AKAP4Q5JQC9 854 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 NGEFQ8N5V2 710 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 KIAA1524Q8TCG1 905 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 SLC52A2Q9HAB3 445 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 REV3LO60673 3130 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 RNMTO43148 476 aaKnown RBP6.79□□□□□ -1.32
CSDE1-202ENST00000339438 AP5Z1O43299 807 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 BMP2KLQ5H9B9 411 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 CERS3Q8IU89 383 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 C7orf43Q8WVR3 580 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 CHL1O00533 1208 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 CASP7P55210 303 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 NGLY1Q96IV0 654 aa6.79□□□□□ -1.32
CSDE1-202ENST00000339438 TTC12Q9H892 705 aaPredicted RBP6.79□□□□□ -1.32
CSDE1-202ENST00000339438 SPTBN5Q9NRC6 3674 aaKnown RBP6.78□□□□□ -1.32
CSDE1-202ENST00000339438 NBPF26B4DH59 902 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 FCHSD2O94868 740 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 IRX3P78415 501 aaPredicted RBP6.78□□□□□ -1.32
CSDE1-202ENST00000339438 DNTTIP2Q5QJE6 756 aaKnown RBP6.78□□□□□ -1.32
CSDE1-202ENST00000339438 NBPF14Q5TI25 921 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 NBPF10Q6P3W6 841 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms