RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ABCC12Q96J65 1359 aa20.29■□□□□ 0.84
CCDC28A-201ENST00000332797 PDE6BP35913 854 aa20.28■□□□□ 0.84
CCDC28A-201ENST00000332797 C2CD5Q86YS7 1000 aa20.28■□□□□ 0.84
CCDC28A-201ENST00000332797 NEXNQ0ZGT2 675 aa20.27■□□□□ 0.84
CCDC28A-201ENST00000332797 YTHDC1Q96MU7 727 aaKnown RBP20.27■□□□□ 0.84
CCDC28A-201ENST00000332797 TRMT112Q9UI30 125 aaKnown RBP20.27■□□□□ 0.84
CCDC28A-201ENST00000332797 COL11A2P13942 1736 aaPredicted RBP20.27■□□□□ 0.83
CCDC28A-201ENST00000332797 TNRC6CQ9HCJ0 1690 aaKnown RBP20.27■□□□□ 0.83
CCDC28A-201ENST00000332797 DCAF8L1A6NGE4 600 aa20.26■□□□□ 0.83
CCDC28A-201ENST00000332797 H0YIN7 160 aa20.26■□□□□ 0.83
CCDC28A-201ENST00000332797 GPR162Q16538 588 aa20.26■□□□□ 0.83
CCDC28A-201ENST00000332797 DNAAF4Q8WXU2 420 aa20.26■□□□□ 0.83
CCDC28A-201ENST00000332797 DLEC1Q9Y238 1755 aa20.25■□□□□ 0.83
CCDC28A-201ENST00000332797 RNF123Q5XPI4 1314 aa20.25■□□□□ 0.83
CCDC28A-201ENST00000332797 F6X3S4 739 aa20.25■□□□□ 0.83
CCDC28A-201ENST00000332797 KCNA3P22001 575 aa20.25■□□□□ 0.83
CCDC28A-201ENST00000332797 TRIM28Q13263 835 aaKnown RBP20.25■□□□□ 0.83
CCDC28A-201ENST00000332797 RARSP54136 660 aaKnown RBP20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 BRCA1P38398 1863 aaKnown RBP20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 SH3TC1Q8TE82 1336 aa20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 IGKV5-2P06315 115 aa20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 SYNE4Q8N205 404 aa20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 CCDC191Q8NCU4 936 aa20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 CWC25Q9NXE8 425 aaPredicted RBP20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 PIM2Q9P1W9 311 aa20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 PDZRN3Q9UPQ7 1066 aa20.24■□□□□ 0.83
CCDC28A-201ENST00000332797 RIC1Q4ADV7 1423 aa20.23■□□□□ 0.83
CCDC28A-201ENST00000332797 YBX3P16989 372 aaKnown RBP eCLIP20.23■□□□□ 0.83
CCDC28A-201ENST00000332797 CWF19L2Q2TBE0 894 aaKnown RBP20.23■□□□□ 0.83
CCDC28A-201ENST00000332797 RTL5Q5HYW3 569 aaPredicted RBP20.23■□□□□ 0.83
CCDC28A-201ENST00000332797 FAM89AQ96GI7 184 aa20.23■□□□□ 0.83
CCDC28A-201ENST00000332797 PTPRCP08575 1304 aa20.22■□□□□ 0.83
CCDC28A-201ENST00000332797 ZNF622Q969S3 477 aaKnown RBP eCLIP20.22■□□□□ 0.83
CCDC28A-201ENST00000332797 BCS1LQ9Y276 419 aa20.22■□□□□ 0.83
CCDC28A-201ENST00000332797 NEURL1BA8MQ27 555 aa20.21■□□□□ 0.83
CCDC28A-201ENST00000332797 SRGNP10124 158 aa20.21■□□□□ 0.83
CCDC28A-201ENST00000332797 HCLS1P14317 486 aaPredicted RBP20.21■□□□□ 0.83
CCDC28A-201ENST00000332797 DALRD3Q5D0E6 543 aaKnown RBP20.21■□□□□ 0.83
CCDC28A-201ENST00000332797 SLC4A10Q6U841 1118 aa20.21■□□□□ 0.83
CCDC28A-201ENST00000332797 GOLGB1Q14789 3259 aaKnown RBP20.2■□□□□ 0.82
CCDC28A-201ENST00000332797 KLRG2A4D1S0 409 aaPredicted RBP20.2■□□□□ 0.82
CCDC28A-201ENST00000332797 ZBTB38Q8NAP3 1195 aaPredicted RBP20.2■□□□□ 0.82
CCDC28A-201ENST00000332797 LINS1Q8NG48 757 aa20.2■□□□□ 0.82
CCDC28A-201ENST00000332797 DDX60Q8IY21 1712 aaKnown RBP20.2■□□□□ 0.82
CCDC28A-201ENST00000332797 SLC10A5Q5PT55 438 aa20.19■□□□□ 0.82
CCDC28A-201ENST00000332797 C3orf67Q6ZVT6 689 aa20.19■□□□□ 0.82
CCDC28A-201ENST00000332797 JARID2Q92833 1246 aaPredicted RBP20.19■□□□□ 0.82
CCDC28A-201ENST00000332797 MASTLQ96GX5 879 aa20.19■□□□□ 0.82
CCDC28A-201ENST00000332797 NLRP3Q96P20 1036 aa20.19■□□□□ 0.82
CCDC28A-201ENST00000332797 NOB1Q9ULX3 412 aaKnown RBP20.19■□□□□ 0.82
CCDC28A-201ENST00000332797 PCCAP05165 728 aaPredicted RBP20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 NPR1P16066 1061 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 BRPF1P55201 1214 aaPredicted RBP20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 BEND3Q5T5X7 828 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 STYK1Q6J9G0 422 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 TTLL6Q8N841 843 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 LAMB2P55268 1798 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 KIF16BQ96L93 1317 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 IRS4O14654 1257 aaPredicted RBP20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 BCAR3O75815 825 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 CRY2Q49AN0 593 aa20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 RPGRQ92834 1020 aaKnown RBP20.18■□□□□ 0.82
CCDC28A-201ENST00000332797 CACNA1SQ13698 1873 aa20.17■□□□□ 0.82
CCDC28A-201ENST00000332797 GCKRQ14397 625 aa20.17■□□□□ 0.82
CCDC28A-201ENST00000332797 CNKSR1Q969H4 720 aa20.17■□□□□ 0.82
CCDC28A-201ENST00000332797 ARFGEF1Q9Y6D6 1849 aa20.16■□□□□ 0.82
CCDC28A-201ENST00000332797 GRIN3BO60391 1043 aa20.16■□□□□ 0.82
CCDC28A-201ENST00000332797 SRCIN1Q9C0H9 1055 aa20.16■□□□□ 0.82
CCDC28A-201ENST00000332797 UBE3BQ7Z3V4 1068 aa20.15■□□□□ 0.82
CCDC28A-201ENST00000332797 HSP90B1P14625 803 aaKnown RBP20.14■□□□□ 0.81
CCDC28A-201ENST00000332797 PRPF40BQ6NWY9 871 aaKnown RBP20.14■□□□□ 0.81
CCDC28A-201ENST00000332797 FRAT1Q92837 279 aaPredicted RBP20.14■□□□□ 0.81
CCDC28A-201ENST00000332797 RBM17Q96I25 401 aaKnown RBP20.14■□□□□ 0.81
CCDC28A-201ENST00000332797 API5Q9BZZ5 524 aaKnown RBP20.14■□□□□ 0.81
CCDC28A-201ENST00000332797 ZNF219Q9P2Y4 722 aaPredicted RBP20.14■□□□□ 0.81
CCDC28A-201ENST00000332797 CDHR2Q9BYE9 1310 aa20.14■□□□□ 0.81
CCDC28A-201ENST00000332797 H7C1W4 665 aa20.13■□□□□ 0.81
CCDC28A-201ENST00000332797 ALDH1L1O75891 902 aa20.13■□□□□ 0.81
CCDC28A-201ENST00000332797 SLX4Q8IY92 1834 aa20.13■□□□□ 0.81
CCDC28A-201ENST00000332797 ALDH1B1P30837 517 aa20.12■□□□□ 0.81
CCDC28A-201ENST00000332797 HOXA10P31260 410 aaPredicted RBP20.12■□□□□ 0.81
CCDC28A-201ENST00000332797 PDE8AO60658 829 aa20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 UTRNP46939 3433 aa20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 IPO8O15397 1037 aaKnown RBP20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 C21orf2O43822 256 aa20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 ARHGAP27Q6ZUM4 889 aa20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 DDX46Q7L014 1031 aaKnown RBP20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 ARHGAP45Q92619 1136 aa20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 C9orf78Q9NZ63 289 aaPredicted RBP20.11■□□□□ 0.81
CCDC28A-201ENST00000332797 ABCC4O15439 1325 aa20.1■□□□□ 0.81
CCDC28A-201ENST00000332797 GRM8O00222 908 aa20.1■□□□□ 0.81
CCDC28A-201ENST00000332797 CASP7P55210 303 aa20.1■□□□□ 0.81
CCDC28A-201ENST00000332797 SF3B3Q15393 1217 aaKnown RBP20.1■□□□□ 0.81
CCDC28A-201ENST00000332797 CRAMP1Q96RY5 1269 aa20.1■□□□□ 0.81
CCDC28A-201ENST00000332797 CCDC85AQ96PX6 553 aaPredicted RBP20.09■□□□□ 0.81
CCDC28A-201ENST00000332797 TRIM27P14373 513 aa20.08■□□□□ 0.81
CCDC28A-201ENST00000332797 CCT4P50991 539 aaKnown RBP20.08■□□□□ 0.81
CCDC28A-201ENST00000332797 CTSWP56202 376 aa20.08■□□□□ 0.81
CCDC28A-201ENST00000332797 ZKSCAN2Q63HK3 967 aa20.08■□□□□ 0.81
CCDC28A-201ENST00000332797 ATF7IPQ6VMQ6 1270 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms