RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SKILP12757 684 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 ZBTB16Q05516 673 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 NCAPD3P42695 1498 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 HDAC9Q9UKV0 1011 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 ARID4AP29374 1257 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-201ENST00000328333 ERCC6LQ2NKX8 1250 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 SPATS2Q86XZ4 545 aaKnown RBP16.3■□□□□ 0.2
COL7A1-201ENST00000328333 TOP2BQ02880 1626 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 MTIF2P46199 727 aaKnown RBP16.3■□□□□ 0.2
COL7A1-201ENST00000328333 MCM6Q14566 821 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 FSIP1Q8NA03 581 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 SCLT1Q96NL6 688 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 PHLDB2Q86SQ0 1253 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 MICALL1Q8N3F8 863 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 CPLX4Q7Z7G2 160 aa16.3■□□□□ 0.2
COL7A1-201ENST00000328333 PTPRCP08575 1304 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 CIB2O75838 187 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 ARHGAP24Q8N264 748 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.29■□□□□ 0.22e-7■■■■□ 24.5
COL7A1-201ENST00000328333 NAA25Q14CX7 972 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 SLC12A7Q9Y666 1083 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 NSD2O96028 1365 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 CADPSQ9ULU8 1353 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 TRHP20396 242 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-201ENST00000328333 IQCA1Q86XH1 822 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 ATRIPQ8WXE1 791 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 PTPRGP23470 1445 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 C1orf115Q9H7X2 142 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 MPNDQ8N594 471 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 CEP126Q9P2H0 1117 aa16.29■□□□□ 0.2
COL7A1-201ENST00000328333 CCDC194A0A1B0GVG4 234 aa16.28■□□□□ 0.2
COL7A1-201ENST00000328333 NDC80O14777 642 aa16.28■□□□□ 0.2
COL7A1-201ENST00000328333 MTRF1LQ9UGC7 380 aaKnown RBP16.28■□□□□ 0.2
COL7A1-201ENST00000328333 TDRD9Q8NDG6 1382 aaKnown RBP16.28■□□□□ 0.2
COL7A1-201ENST00000328333 BAG4O95429 457 aaKnown RBP16.28■□□□□ 0.2
COL7A1-201ENST00000328333 FKBP4Q02790 459 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL7A1-201ENST00000328333 TBC1D2Q9BYX2 928 aa16.28■□□□□ 0.2
COL7A1-201ENST00000328333 STMN1P16949 149 aa16.28■□□□□ 0.2
COL7A1-201ENST00000328333 ZNF692Q9BU19 519 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-201ENST00000328333 TRMT1Q9NXH9 659 aaKnown RBP16.28■□□□□ 0.2
COL7A1-201ENST00000328333 GMNNO75496 209 aa16.27■□□□□ 0.2
COL7A1-201ENST00000328333 CCDC174Q6PII3 467 aa16.27■□□□□ 0.2
COL7A1-201ENST00000328333 TBC1D32Q96NH3 1257 aa16.27■□□□□ 0.2
COL7A1-201ENST00000328333 SPDYE4A6NLX3 237 aa16.27■□□□□ 0.2
COL7A1-201ENST00000328333 CATIPQ7Z7H3 387 aa16.27■□□□□ 0.2
COL7A1-201ENST00000328333 DHX37Q8IY37 1157 aaKnown RBP16.27■□□□□ 0.2
COL7A1-201ENST00000328333 NUTM2DQ5VT03 806 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-201ENST00000328333 TCHPQ9BT92 498 aa16.27■□□□□ 0.19
COL7A1-201ENST00000328333 COMMD10Q9Y6G5 202 aa16.27■□□□□ 0.19
COL7A1-201ENST00000328333 UBASH3AP57075 661 aa16.27■□□□□ 0.19
COL7A1-201ENST00000328333 SSRP1Q08945 709 aaKnown RBP16.27■□□□□ 0.19
COL7A1-201ENST00000328333 AKR1B10O60218 316 aa16.27■□□□□ 0.19
COL7A1-201ENST00000328333 GIGYF1O75420 1035 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-201ENST00000328333 KIF21AQ7Z4S6 1674 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 CASQ2O14958 399 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-201ENST00000328333 NOP2P46087 812 aaKnown RBP16.26■□□□□ 0.19
COL7A1-201ENST00000328333 ATL3Q6DD88 541 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 GOLGA8BA8MQT2 603 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 SF3B2Q13435 895 aaKnown RBP16.26■□□□□ 0.19
COL7A1-201ENST00000328333 ERMNQ8TAM6 284 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 FERMT2Q96AC1 680 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 FEZ2Q9UHY8 353 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-201ENST00000328333 CUL5Q93034 780 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 ATP2B2Q01814 1243 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 CNGA4Q8IV77 575 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 SLF2Q8IX21 1173 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 CKAP2LQ8IYA6 745 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 CDCA7LQ96GN5 454 aa16.26■□□□□ 0.19
COL7A1-201ENST00000328333 EXOC1Q9NV70 894 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 FANCD2Q9BXW9 1451 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 KIF5AQ12840 1032 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 PRPF4BQ13523 1007 aaKnown RBP16.25■□□□□ 0.19
COL7A1-201ENST00000328333 TTF1Q15361 905 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-201ENST00000328333 NBPF8Q3BBV2 869 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 ZNF853P0CG23 659 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 WHAMMP3Q1A5X7 153 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 SAMD1Q6SPF0 538 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-201ENST00000328333 NAPBQ9H115 298 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 MTMR7Q9Y216 660 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 LUC7L3O95232 432 aaKnown RBP16.25■□□□□ 0.19
COL7A1-201ENST00000328333 MSH5O43196 834 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 TNNC1P63316 161 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 RASSF2P50749 326 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-201ENST00000328333 IRX4P78413 519 aa16.25■□□□□ 0.19
COL7A1-201ENST00000328333 NUTM2FA1L443 756 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 N4BP3O15049 544 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 RABGAP1Q9Y3P9 1069 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 CEP120Q8N960 986 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 NLRP2Q9NX02 1062 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 BICDL2A1A5D9 508 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 MPHOSPH10O00566 681 aaKnown RBP16.24■□□□□ 0.19
COL7A1-201ENST00000328333 MAP7Q14244 749 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 CCDC40Q4G0X9 1142 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 FYB2Q5VWT5 728 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 BCAR3O75815 825 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 GPR161Q8N6U8 529 aaKnown RBP16.24■□□□□ 0.19
COL7A1-201ENST00000328333 EVI5LQ96CN4 794 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 PPFIA3O75145 1194 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 ZNF365Q70YC5 407 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms