RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 NECTIN1Q15223 517 aa17.33■□□□□ 0.37
SSBP3-201ENST00000326956 HOXB7P09629 217 aa17.33■□□□□ 0.36
SSBP3-201ENST00000326956 CCDC186Q7Z3E2 898 aa17.33■□□□□ 0.36
SSBP3-201ENST00000326956 BICD2Q8TD16 824 aa17.33■□□□□ 0.36
SSBP3-201ENST00000326956 TFIP11Q9UBB9 837 aaKnown RBP17.33■□□□□ 0.36
SSBP3-201ENST00000326956 PA2G4Q9UQ80 394 aaKnown RBP17.33■□□□□ 0.36
SSBP3-201ENST00000326956 TOPAZ1Q8N9V7 1692 aa17.33■□□□□ 0.36
SSBP3-201ENST00000326956 PTPRUQ92729 1446 aa17.32■□□□□ 0.36
SSBP3-201ENST00000326956 ELP1O95163 1332 aa17.32■□□□□ 0.36
SSBP3-201ENST00000326956 LTKP29376 864 aa17.32■□□□□ 0.36
SSBP3-201ENST00000326956 G3BP1Q13283 466 aaKnown RBP eCLIP17.32■□□□□ 0.36
SSBP3-201ENST00000326956 ANO6Q4KMQ2 910 aa17.32■□□□□ 0.36
SSBP3-201ENST00000326956 DDX19AQ9NUU7 478 aaKnown RBP17.32■□□□□ 0.36
SSBP3-201ENST00000326956 MRVI1Q9Y6F6 885 aa17.32■□□□□ 0.36
SSBP3-201ENST00000326956 ZHX1Q9UKY1 873 aaPredicted RBP17.32■□□□□ 0.36
SSBP3-201ENST00000326956 NMIQ13287 307 aaPredicted RBP17.31■□□□□ 0.36
SSBP3-201ENST00000326956 FSD1Q9BTV5 496 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 KCNB2Q92953 911 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 FAM227BQ96M60 508 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 TCEANC2Q96MN5 208 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 NPHP3Q7Z494 1330 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 DMTNQ08495 405 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 STK3Q13188 491 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 CBX8Q9HC52 389 aa17.31■□□□□ 0.36
SSBP3-201ENST00000326956 LRRC37A3O60309 1634 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 BTBD11A6QL63 1104 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 SLC27A2O14975 620 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 ST3GAL1Q11201 340 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 MAP4K1Q92918 833 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 DBF4Q9UBU7 674 aaPredicted RBP17.3■□□□□ 0.36
SSBP3-201ENST00000326956 MAP3K2Q9Y2U5 619 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 PLEKHG1Q9ULL1 1385 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 MTX1Q13505 466 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 UTP14CQ5TAP6 766 aaKnown RBP17.3■□□□□ 0.36
SSBP3-201ENST00000326956 LGR6Q9HBX8 967 aa17.3■□□□□ 0.36
SSBP3-201ENST00000326956 ALDH1L1O75891 902 aa17.29■□□□□ 0.36
SSBP3-201ENST00000326956 C16orf45Q96MC5 204 aaPredicted RBP17.29■□□□□ 0.36
SSBP3-201ENST00000326956 SPDYE4A6NLX3 237 aa17.29■□□□□ 0.36
SSBP3-201ENST00000326956 CCDC8Q9H0W5 538 aaPredicted RBP17.29■□□□□ 0.36
SSBP3-201ENST00000326956 ZNF165P49910 485 aa17.28■□□□□ 0.36
SSBP3-201ENST00000326956 H3BQV1 296 aa17.28■□□□□ 0.36
SSBP3-201ENST00000326956 ATP2B3Q16720 1220 aa17.28■□□□□ 0.36
SSBP3-201ENST00000326956 IFFO2Q5TF58 517 aa17.28■□□□□ 0.36
SSBP3-201ENST00000326956 LARP1Q6PKG0 1096 aaKnown RBP17.28■□□□□ 0.36
SSBP3-201ENST00000326956 BOLA2Q9H3K6 86 aa17.28■□□□□ 0.36
SSBP3-201ENST00000326956 GOLGA6L19H0YKK7 550 aa17.27■□□□□ 0.36
SSBP3-201ENST00000326956 KCNQ3O43525 872 aa17.27■□□□□ 0.36
SSBP3-201ENST00000326956 ZSCAN20P17040 1043 aaPredicted RBP17.27■□□□□ 0.36
SSBP3-201ENST00000326956 LEO1Q8WVC0 666 aaPredicted RBP17.27■□□□□ 0.36
SSBP3-201ENST00000326956 GTPBP4Q9BZE4 634 aaKnown RBP17.27■□□□□ 0.36
SSBP3-201ENST00000326956 CLSTN2Q9H4D0 955 aa17.27■□□□□ 0.36
SSBP3-201ENST00000326956 N4BP2Q86UW6 1770 aaPredicted RBP17.27■□□□□ 0.36
SSBP3-201ENST00000326956 ZNF75DP51815 510 aa17.27■□□□□ 0.36
SSBP3-201ENST00000326956 TNNT1P13805 278 aa17.27■□□□□ 0.35
SSBP3-201ENST00000326956 RPS6KB1P23443 525 aa17.27■□□□□ 0.35
SSBP3-201ENST00000326956 LRMPQ12912 555 aa17.27■□□□□ 0.35
SSBP3-201ENST00000326956 TPD52L1Q16890 204 aaPredicted RBP17.27■□□□□ 0.35
SSBP3-201ENST00000326956 HSP90B1P14625 803 aaKnown RBP17.26■□□□□ 0.35
SSBP3-201ENST00000326956 CWF19L2Q2TBE0 894 aaKnown RBP17.26■□□□□ 0.35
SSBP3-201ENST00000326956 ZNF530Q6P9A1 599 aaPredicted RBP17.26■□□□□ 0.35
SSBP3-201ENST00000326956 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.26■□□□□ 0.35
SSBP3-201ENST00000326956 CLIP2Q9UDT6 1046 aa17.26■□□□□ 0.35
SSBP3-201ENST00000326956 ADCY9O60503 1353 aa17.26■□□□□ 0.35
SSBP3-201ENST00000326956 U2AF2P26368 475 aaKnown RBP eCLIP17.26■□□□□ 0.35
SSBP3-201ENST00000326956 FGD1P98174 961 aa17.26■□□□□ 0.35
SSBP3-201ENST00000326956 KSR2Q6VAB6 950 aa17.26■□□□□ 0.35
SSBP3-201ENST00000326956 DNAJC25Q9H1X3 360 aa17.26■□□□□ 0.35
SSBP3-201ENST00000326956 SMTNL1A8MU46 457 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 SIL1Q9H173 461 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 HMG20BQ9P0W2 317 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 NRBP1Q9UHY1 535 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 A0A0D9SFI3 127 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 CTIFO43310 598 aaKnown RBP17.25■□□□□ 0.35
SSBP3-201ENST00000326956 ZSCAN25Q6NSZ9 544 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 CCDC112Q8NEF3 446 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 ANKRD7Q92527 254 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 EAF2Q96CJ1 260 aaPredicted RBP17.25■□□□□ 0.35
SSBP3-201ENST00000326956 CEMIPQ8WUJ3 1361 aa17.25■□□□□ 0.35
SSBP3-201ENST00000326956 MPRIPQ6WCQ1 1025 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 DDX58O95786 925 aaKnown RBP17.24■□□□□ 0.35
SSBP3-201ENST00000326956 KRT32Q14532 448 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 PLPPR3Q6T4P5 718 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 TDRD7Q8NHU6 1098 aaKnown RBP17.24■□□□□ 0.35
SSBP3-201ENST00000326956 NR1I2O75469 434 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 CAVIN2O95810 425 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 C1orf141Q5JVX7 400 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 ZNF592Q92610 1267 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 PAXBP1Q9Y5B6 917 aa17.24■□□□□ 0.35
SSBP3-201ENST00000326956 GRM8O00222 908 aa17.23■□□□□ 0.35
SSBP3-201ENST00000326956 PLEKHO1Q53GL0 409 aaPredicted RBP17.23■□□□□ 0.35
SSBP3-201ENST00000326956 CFAP45Q9UL16 551 aa17.23■□□□□ 0.35
SSBP3-201ENST00000326956 PLA2G4DQ86XP0 818 aa17.23■□□□□ 0.35
SSBP3-201ENST00000326956 FEZ1Q99689 392 aa17.23■□□□□ 0.35
SSBP3-201ENST00000326956 AIMP1Q12904 312 aaKnown RBP17.22■□□□□ 0.35
SSBP3-201ENST00000326956 BICC1Q9H694 974 aaKnown RBP17.22■□□□□ 0.35
SSBP3-201ENST00000326956 BECN2A8MW95 431 aa17.22■□□□□ 0.35
SSBP3-201ENST00000326956 SASH1O94885 1247 aa17.22■□□□□ 0.35
SSBP3-201ENST00000326956 TOB2Q14106 344 aaPredicted RBP17.22■□□□□ 0.35
SSBP3-201ENST00000326956 AKAP4Q5JQC9 854 aa17.22■□□□□ 0.35
SSBP3-201ENST00000326956 NBPF6Q5VWK0 638 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 550.6 ms