RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 SURF6O75683 361 aaKnown RBP9.55□□□□□ -0.88
VPS41-202ENST00000310301 CASQ1P31415 396 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 SUPT20HQ8NEM7 779 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 TIGD1Q96MW7 591 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 ROBO2Q9HCK4 1378 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 MTMR7Q9Y216 660 aa9.55□□□□□ -0.88
VPS41-202ENST00000310301 CFAP65Q6ZU64 1925 aaKnown RBP9.55□□□□□ -0.88
VPS41-202ENST00000310301 CEP170BQ9Y4F5 1589 aaPredicted RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 GOLGA6L10A0A0M3HER8 536 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 HIP1O00291 1037 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 EPB41L2O43491 1005 aaKnown RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 MAP2K1Q02750 393 aaPredicted RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 MAP3K11Q16584 847 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 DNAJC2Q99543 621 aaKnown RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 URI1O94763 535 aaPredicted RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 GTF2A1P52655 376 aaPredicted RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 CAMK4Q16566 473 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 ARHGAP29Q52LW3 1261 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 FAM107BQ9H098 131 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 TET3O43151 1660 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 WDR17Q8IZU2 1322 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 SMTNL1A8MU46 457 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 ERVV-2B6SEH9 535 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 DYNC1I1O14576 645 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 EZRP15311 586 aaKnown RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 CCDC152Q4G0S7 254 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 OGFOD1Q8N543 542 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 NOB1Q9ULX3 412 aaKnown RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 SYNMO15061 1565 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 TMPOP42166 694 aaKnown RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 ANKRD1Q15327 319 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 KIAA1328Q86T90 577 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 DZIP3Q86Y13 1208 aaKnown RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 ANKRD18BA2A2Z9 1011 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 SART3Q15020 963 aaKnown RBP9.54□□□□□ -0.88
VPS41-202ENST00000310301 MCM10Q7L590 875 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 CNBD1Q8NA66 436 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 TANGO6Q9C0B7 1094 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.54□□□□□ -0.886e-7■■■■□ 20.2
VPS41-202ENST00000310301 SPON1Q9HCB6 807 aa9.54□□□□□ -0.88
VPS41-202ENST00000310301 PDE6BP35913 854 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 RBM17Q96I25 401 aaKnown RBP9.53□□□□□ -0.88
VPS41-202ENST00000310301 CFAP45Q9UL16 551 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 NIP7Q9Y221 180 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS41-202ENST00000310301 EIF6P56537 245 aaKnown RBP9.53□□□□□ -0.88
VPS41-202ENST00000310301 IFIT5Q13325 482 aaKnown RBP9.53□□□□□ -0.88
VPS41-202ENST00000310301 STIM1Q13586 685 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 VPS72Q15906 364 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 ZSCAN29Q8IWY8 852 aaPredicted RBP9.53□□□□□ -0.88
VPS41-202ENST00000310301 EXOSC9Q06265 439 aaKnown RBP9.53□□□□□ -0.88
VPS41-202ENST00000310301 EIF4A2Q14240 407 aaKnown RBP9.53□□□□□ -0.88
VPS41-202ENST00000310301 MAP9Q49MG5 647 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 DUSP27Q5VZP5 1158 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 MICALCLQ6ZW33 695 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 PRDM15P57071 1507 aaPredicted RBP9.53□□□□□ -0.88
VPS41-202ENST00000310301 JAKMIP3Q5VZ66 844 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 ZSCAN25Q6NSZ9 544 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 AKAP2Q9Y2D5 859 aa9.53□□□□□ -0.88
VPS41-202ENST00000310301 TTC39AQ5SRH9 613 aa9.52□□□□□ -0.88
VPS41-202ENST00000310301 ZFP91Q96JP5 570 aaPredicted RBP9.52□□□□□ -0.88
VPS41-202ENST00000310301 CDC42BPAQ5VT25 1732 aa9.52□□□□□ -0.88
VPS41-202ENST00000310301 ZSCAN12O43309 604 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 GBP2P32456 591 aaPredicted RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 CFAP100Q494V2 611 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 PARP10Q53GL7 1025 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 C16orf45Q96MC5 204 aaPredicted RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 UTP14AQ9BVJ6 771 aaKnown RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 CLTCQ00610 1675 aaKnown RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 SFPQP23246 707 aaKnown RBP eCLIP9.52□□□□□ -0.89
VPS41-202ENST00000310301 TNS3Q68CZ2 1445 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 MYOM2P54296 1465 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 MAP4K4O95819 1239 aaPredicted RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 KRT18P05783 430 aaKnown RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 CHD1LQ86WJ1 897 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 ZBTB3Q9H5J0 574 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.52□□□□□ -0.897e-7■■■□□ 17.9
VPS41-202ENST00000310301 SAMD1Q6SPF0 538 aaPredicted RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 CNKSR2Q8WXI2 1034 aa9.52□□□□□ -0.89
VPS41-202ENST00000310301 CWC25Q9NXE8 425 aaPredicted RBP9.52□□□□□ -0.89
VPS41-202ENST00000310301 MADDQ8WXG6 1647 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 LMAN1P49257 510 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 ATF7IPQ6VMQ6 1270 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 A0A1W2PP64 1363 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 GNAI2P04899 355 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 GPTP24298 496 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 CCDC183Q5T5S1 534 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 CLIP2Q9UDT6 1046 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 TAF4BQ92750 862 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 EYA1Q99502 592 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 PDRG1Q9NUG6 133 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 PLEKHH1Q9ULM0 1364 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 NFATC2IPQ8NCF5 419 aa9.51□□□□□ -0.89
VPS41-202ENST00000310301 TRMT1Q9NXH9 659 aaKnown RBP9.51□□□□□ -0.89
VPS41-202ENST00000310301 MNAT1P51948 309 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 MYD88Q99836 296 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 LDHCP07864 332 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 MCM3P25205 808 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 METTL24Q5JXM2 366 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 CCDC113Q9H0I3 377 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 POLKQ9UBT6 870 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms