RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 TEX13AQ9BXU3 409 aaPredicted RBP7.98□□□□□ -1.13
USP47-201ENST00000305481 NUTM2BA6NNL0 878 aaPredicted RBP7.97□□□□□ -1.13
USP47-201ENST00000305481 NUTM2EB1AL46 878 aaPredicted RBP7.97□□□□□ -1.13
USP47-201ENST00000305481 CYP19A1P11511 503 aaPredicted RBP7.97□□□□□ -1.13
USP47-201ENST00000305481 TFCP2Q12800 502 aa7.97□□□□□ -1.13
USP47-201ENST00000305481 NUTM2AQ8IVF1 878 aaPredicted RBP7.97□□□□□ -1.13
USP47-201ENST00000305481 IL17RAQ96F46 866 aa7.97□□□□□ -1.13
USP47-201ENST00000305481 FOXD4L1Q9NU39 408 aa7.97□□□□□ -1.13
USP47-201ENST00000305481 TCIRG1Q13488 830 aa7.97□□□□□ -1.13
USP47-201ENST00000305481 STARD3NLO95772 234 aa7.97□□□□□ -1.13
USP47-201ENST00000305481 CWC27Q6UX04 472 aaKnown RBP7.97□□□□□ -1.13
USP47-201ENST00000305481 SYTL4Q96C24 671 aaPredicted RBP7.97□□□□□ -1.13
USP47-201ENST00000305481 ZNF330Q9Y3S2 320 aaPredicted RBP7.97□□□□□ -1.13
USP47-201ENST00000305481 SPATA31A5Q5VU36 1347 aa7.97□□□□□ -1.13
USP47-201ENST00000305481 SPATA31A7Q8IWB4 1347 aa7.97□□□□□ -1.13
USP47-201ENST00000305481 MARCH10Q8NA82 808 aaPredicted RBP7.96□□□□□ -1.13
USP47-201ENST00000305481 LSG1Q9H089 658 aaKnown RBP7.96□□□□□ -1.13
USP47-201ENST00000305481 DBNLQ9UJU6 430 aaKnown RBP7.96□□□□□ -1.13
USP47-201ENST00000305481 THRAP3Q9Y2W1 955 aaKnown RBP7.96□□□□□ -1.13
USP47-201ENST00000305481 TRIM28Q13263 835 aaKnown RBP7.96□□□□□ -1.14
USP47-201ENST00000305481 TNNI3KQ59H18 835 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 ATG9AQ7Z3C6 839 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 EVI5LQ96CN4 794 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 GPATCH3Q96I76 525 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 FPGT-TNNI3KV9GXZ4 949 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 KAT6BQ8WYB5 2073 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 SLIT2O94813 1529 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 DOT1LQ8TEK3 1739 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 EPB41L2O43491 1005 aaKnown RBP7.96□□□□□ -1.14
USP47-201ENST00000305481 HSPA4P34932 840 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 ANAPC15P60006 121 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 DDB1Q16531 1140 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 HLFQ16534 295 aa7.96□□□□□ -1.14
USP47-201ENST00000305481 CDCA7Q9BWT1 371 aaPredicted RBP7.96□□□□□ -1.14
USP47-201ENST00000305481 TOM1O60784 492 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 BOLA2Q9H3K6 86 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 MAP3K15Q6ZN16 1313 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 RAD50Q92878 1312 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 NEK4P51957 841 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 CIZ1Q9ULV3 898 aaPredicted RBP7.95□□□□□ -1.14
USP47-201ENST00000305481 ZBTB1Q9Y2K1 713 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 ST18O60284 1047 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 SYNE4Q8N205 404 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 ZNF594Q96JF6 807 aaPredicted RBP7.95□□□□□ -1.14
USP47-201ENST00000305481 CHMP3Q9Y3E7 222 aa7.95□□□□□ -1.14
USP47-201ENST00000305481 HSP90AA1P07900 732 aaKnown RBP7.94□□□□□ -1.14
USP47-201ENST00000305481 MCM4P33991 863 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 PTH1RQ03431 593 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 RAB3GAP1Q15042 981 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 LRRC24Q50LG9 513 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 GIGYF2Q6Y7W6 1299 aaKnown RBP7.94□□□□□ -1.14
USP47-201ENST00000305481 KIF6Q6ZMV9 814 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 TNPO1Q92973 898 aaKnown RBP7.94□□□□□ -1.14
USP47-201ENST00000305481 EDC3Q96F86 508 aaKnown RBP7.94□□□□□ -1.14
USP47-201ENST00000305481 FAM89AQ96GI7 184 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 PKNOX2Q96KN3 472 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 FAM227BQ96M60 508 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 DBNDD2Q9BQY9 259 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 ATP5JP18859 108 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 MCCP23508 829 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 BARGINQ6ZT62 677 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 RASEFQ8IZ41 740 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 ACSBG1Q96GR2 724 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 DIAPH3Q9NSV4 1193 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 PCCAP05165 728 aaPredicted RBP7.94□□□□□ -1.14
USP47-201ENST00000305481 ARXQ96QS3 562 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 PUS3Q9BZE2 481 aaKnown RBP7.94□□□□□ -1.14
USP47-201ENST00000305481 SNX14Q9Y5W7 946 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 NDUFB9Q9Y6M9 179 aa7.94□□□□□ -1.14
USP47-201ENST00000305481 NWD2Q9ULI1 1742 aa7.93□□□□□ -1.14
USP47-201ENST00000305481 GSE1Q14687 1217 aa7.93□□□□□ -1.14
USP47-201ENST00000305481 INTS5Q6P9B9 1019 aaKnown RBP7.93□□□□□ -1.14
USP47-201ENST00000305481 NLRP10Q86W26 655 aa7.93□□□□□ -1.14
USP47-201ENST00000305481 ZGPATQ8N5A5 531 aaKnown RBP7.93□□□□□ -1.14
USP47-201ENST00000305481 ZBTB38Q8NAP3 1195 aaPredicted RBP7.93□□□□□ -1.14
USP47-201ENST00000305481 UPF3BQ9BZI7 483 aaKnown RBP7.93□□□□□ -1.14
USP47-201ENST00000305481 EYA2O00167 538 aa7.93□□□□□ -1.14
USP47-201ENST00000305481 GPTP24298 496 aa7.93□□□□□ -1.14
USP47-201ENST00000305481 NMIQ13287 307 aaPredicted RBP7.93□□□□□ -1.14
USP47-201ENST00000305481 PLA2G12BQ9BX93 195 aa7.93□□□□□ -1.14
USP47-201ENST00000305481 SNRKQ9NRH2 765 aa7.93□□□□□ -1.14
USP47-201ENST00000305481 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.93□□□□□ -1.14
USP47-201ENST00000305481 A0A0D9SFI3 127 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 CSF1RP07333 972 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 TIMM10P62072 90 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 TMX3Q96JJ7 454 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 TBC1D2BQ9UPU7 963 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 CCDC9Q9Y3X0 531 aaKnown RBP7.92□□□□□ -1.14
USP47-201ENST00000305481 BCL9LQ86UU0 1499 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 KCNQ2O43526 872 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 CHGBP05060 677 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 IL6STP40189 918 aaPredicted RBP7.92□□□□□ -1.14
USP47-201ENST00000305481 IL15P40933 162 aaPredicted RBP7.92□□□□□ -1.14
USP47-201ENST00000305481 PKP1Q13835 747 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 RUFY2Q8WXA3 655 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 UBAP1LF5GYI3 381 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 CIAO1O76071 339 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 SSFA2P28290 1259 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 EIF5P55010 431 aaKnown RBP7.92□□□□□ -1.14
USP47-201ENST00000305481 ITPK1Q13572 414 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms