RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 SOGA3Q5TF21 947 aa15.67■□□□□ 0.1
HPS3-201ENST00000296051 RAB11FIP4Q86YS3 637 aa15.67■□□□□ 0.1
HPS3-201ENST00000296051 TRMT2AQ8IZ69 625 aaKnown RBP15.67■□□□□ 0.1
HPS3-201ENST00000296051 CLEC11AQ9Y240 323 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 PATL2C9JE40 543 aaKnown RBP15.66■□□□□ 0.1
HPS3-201ENST00000296051 POLD1P28340 1107 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 TRIM22Q8IYM9 498 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 SMARCC1Q92922 1105 aaPredicted RBP15.66■□□□□ 0.1
HPS3-201ENST00000296051 MKNK2Q9HBH9 465 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 KIAA0556O60303 1618 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 CCDC69A6NI79 296 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 U2AF2P26368 475 aaKnown RBP eCLIP15.66■□□□□ 0.16e-7■■■■□ 26.4
HPS3-201ENST00000296051 CDK5RAP3Q96JB5 506 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 CDC5LQ99459 802 aaKnown RBP15.66■□□□□ 0.1
HPS3-201ENST00000296051 SLAIN2Q9P270 581 aa15.66■□□□□ 0.1
HPS3-201ENST00000296051 ZSWIM4Q9H7M6 989 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 AK2P54819 239 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 TMCO3Q6UWJ1 677 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 KRT18P05783 430 aaKnown RBP15.65■□□□□ 0.1
HPS3-201ENST00000296051 HSP90AA4PQ58FG1 418 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 SH2B1Q9NRF2 756 aaPredicted RBP15.65■□□□□ 0.1
HPS3-201ENST00000296051 MAP3K2Q9Y2U5 619 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 TTC21AQ8NDW8 1320 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 SYT1P21579 422 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 NFATC2IPQ8NCF5 419 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 RHPN1Q8TCX5 695 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 ZHX3Q9H4I2 956 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 SNRKQ9NRH2 765 aa15.65■□□□□ 0.1
HPS3-201ENST00000296051 MAGI2Q86UL8 1455 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 F13A1P00488 732 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 GSPT1P15170 499 aaKnown RBP15.64■□□□□ 0.09
HPS3-201ENST00000296051 CEP135Q66GS9 1140 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 DISP1Q96F81 1524 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 ST5P78524 1137 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 ANKRD13DQ6ZTN6 518 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 G2E3Q7L622 706 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 FAM98CQ17RN3 349 aaKnown RBP15.64■□□□□ 0.09
HPS3-201ENST00000296051 ARHGEF12Q9NZN5 1544 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 FSIP1Q8NA03 581 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 FAM200AQ8TCP9 573 aa15.64■□□□□ 0.09
HPS3-201ENST00000296051 PTPRCP08575 1304 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 TMC6Q7Z403 805 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 NIP7Q9Y221 180 aaKnown RBP eCLIP15.63■□□□□ 0.09
HPS3-201ENST00000296051 CTTNBP2Q8WZ74 1663 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 CWC25Q9NXE8 425 aaPredicted RBP15.63■□□□□ 0.09
HPS3-201ENST00000296051 RTCBQ9Y3I0 505 aaKnown RBP15.63■□□□□ 0.09
HPS3-201ENST00000296051 WDR62O43379 1518 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 SKILP12757 684 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 SLC5A1P13866 664 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 NAP1L1P55209 391 aaKnown RBP15.63■□□□□ 0.09
HPS3-201ENST00000296051 WWC2Q6AWC2 1192 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 LEKR1Q6ZMV7 388 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 NLRP3Q96P20 1036 aa15.63■□□□□ 0.09
HPS3-201ENST00000296051 AXDND1Q5T1B0 1012 aaPredicted RBP15.62■□□□□ 0.09
HPS3-201ENST00000296051 COPS6Q7L5N1 327 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 GPT2Q8TD30 523 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 ABCC10Q5T3U5 1492 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 CHMLP26374 656 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 CWC15Q9P013 229 aaKnown RBP15.62■□□□□ 0.09
HPS3-201ENST00000296051 CTNNA3Q9UI47 895 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 IQSEC3Q9UPP2 1182 aaPredicted RBP15.62■□□□□ 0.09
HPS3-201ENST00000296051 RIOK3O14730 519 aaKnown RBP15.62■□□□□ 0.09
HPS3-201ENST00000296051 SIRT1Q96EB6 747 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 ECHDC1Q9NTX5 307 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 DDX19AQ9NUU7 478 aaKnown RBP15.62■□□□□ 0.09
HPS3-201ENST00000296051 ANKRD36BQ8N2N9 1353 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 MAP3K12Q12852 859 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 CCDC70Q6NSX1 233 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 CCDC82Q8N4S0 544 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 CAGE1Q8TC20 777 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 BBXQ8WY36 941 aaPredicted RBP15.62■□□□□ 0.09
HPS3-201ENST00000296051 ANO10Q9NW15 660 aa15.62■□□□□ 0.09
HPS3-201ENST00000296051 TYRO3Q06418 890 aa15.61■□□□□ 0.09
HPS3-201ENST00000296051 PPP1R9BQ96SB3 815 aa15.61■□□□□ 0.09
HPS3-201ENST00000296051 FAM193AP78312 1265 aa15.61■□□□□ 0.09
HPS3-201ENST00000296051 XAGE3Q8WTP9 111 aa15.61■□□□□ 0.09
HPS3-201ENST00000296051 CCDC102AQ96A19 550 aa15.61■□□□□ 0.09
HPS3-201ENST00000296051 FEZ1Q99689 392 aa15.61■□□□□ 0.09
HPS3-201ENST00000296051 PPIP5K1Q6PFW1 1433 aa15.61■□□□□ 0.09
HPS3-201ENST00000296051 F8W031 263 aaPredicted RBP15.6■□□□□ 0.09
HPS3-201ENST00000296051 SSBP05455 408 aaKnown RBP eCLIP15.6■□□□□ 0.09
HPS3-201ENST00000296051 SLC4A8Q2Y0W8 1093 aa15.6■□□□□ 0.09
HPS3-201ENST00000296051 DHX37Q8IY37 1157 aaKnown RBP15.6■□□□□ 0.09
HPS3-201ENST00000296051 NAPBQ9H115 298 aa15.6■□□□□ 0.09
HPS3-201ENST00000296051 PA2G4Q9UQ80 394 aaKnown RBP15.6■□□□□ 0.09
HPS3-201ENST00000296051 NUP160Q12769 1436 aa15.6■□□□□ 0.09
HPS3-201ENST00000296051 ZNF76P36508 570 aa15.6■□□□□ 0.09
HPS3-201ENST00000296051 CPLX3Q8WVH0 158 aa15.6■□□□□ 0.09
HPS3-201ENST00000296051 NOM1Q5C9Z4 860 aaKnown RBP15.59■□□□□ 0.09
HPS3-201ENST00000296051 CT47A1Q5JQC4 288 aaPredicted RBP15.59■□□□□ 0.09
HPS3-201ENST00000296051 PAF1Q8N7H5 531 aa15.59■□□□□ 0.09
HPS3-201ENST00000296051 BRF1Q92994 677 aa15.59■□□□□ 0.09
HPS3-201ENST00000296051 ABCC2Q92887 1545 aa15.59■□□□□ 0.09
HPS3-201ENST00000296051 SNW1Q13573 536 aaKnown RBP15.59■□□□□ 0.09
HPS3-201ENST00000296051 KLHL10Q6JEL2 608 aa15.59■□□□□ 0.09
HPS3-201ENST00000296051 USP21Q9UK80 565 aa15.59■□□□□ 0.09
HPS3-201ENST00000296051 H0YHG0 523 aa15.59■□□□□ 0.09
HPS3-201ENST00000296051 RANBP6O60518 1105 aaKnown RBP15.59■□□□□ 0.09
HPS3-201ENST00000296051 EPS15P42566 896 aa15.59■□□□□ 0.09
HPS3-201ENST00000296051 RBM26Q5T8P6 1007 aaKnown RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms