RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 SYNMO15061 1565 aa10.8□□□□□ -0.68
PDGFC-201ENST00000274071 KCNV1Q6PIU1 500 aa10.8□□□□□ -0.68
PDGFC-201ENST00000274071 PLEKHM2Q8IWE5 1019 aa10.8□□□□□ -0.68
PDGFC-201ENST00000274071 EPC1Q9H2F5 836 aa10.8□□□□□ -0.68
PDGFC-201ENST00000274071 SLC24A3Q9HC58 644 aa10.8□□□□□ -0.68
PDGFC-201ENST00000274071 PPIP5K1Q6PFW1 1433 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 ZC3H13Q5T200 1668 aaKnown RBP10.79□□□□□ -0.68
PDGFC-201ENST00000274071 NEMFO60524 1076 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 MCM2P49736 904 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 NOL8Q76FK4 1167 aaKnown RBP10.79□□□□□ -0.68
PDGFC-201ENST00000274071 RUNDC1Q96C34 613 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 FUT8Q9BYC5 575 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 ASXL1Q8IXJ9 1541 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 FIBPO43427 364 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 PAX7P23759 505 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 CCZ1BP86790 482 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 CCZ1P86791 482 aaPredicted RBP10.79□□□□□ -0.68
PDGFC-201ENST00000274071 TYRO3Q06418 890 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 TMEM132EQ6IEE7 984 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 KCND1Q9NSA2 647 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 TRAK1Q9UPV9 953 aa10.79□□□□□ -0.68
PDGFC-201ENST00000274071 PIK3C2BO00750 1634 aa10.78□□□□□ -0.68
PDGFC-201ENST00000274071 SNW1Q13573 536 aaKnown RBP10.78□□□□□ -0.68
PDGFC-201ENST00000274071 GORABQ5T7V8 394 aa10.78□□□□□ -0.68
PDGFC-201ENST00000274071 LRRC31Q6UY01 552 aa10.78□□□□□ -0.68
PDGFC-201ENST00000274071 JPH2Q9BR39 696 aaPredicted RBP10.78□□□□□ -0.68
PDGFC-201ENST00000274071 VPS18Q9P253 973 aa10.78□□□□□ -0.68
PDGFC-201ENST00000274071 ARID4AP29374 1257 aaPredicted RBP10.78□□□□□ -0.68
PDGFC-201ENST00000274071 GIMAP7Q8NHV1 300 aa10.78□□□□□ -0.68
PDGFC-201ENST00000274071 TSR2Q969E8 191 aaKnown RBP10.78□□□□□ -0.68
PDGFC-201ENST00000274071 GNL3LQ9NVN8 582 aaKnown RBP10.78□□□□□ -0.68
PDGFC-201ENST00000274071 ANO6Q4KMQ2 910 aa10.77□□□□□ -0.68
PDGFC-201ENST00000274071 CCDC158Q5M9N0 1113 aa10.77□□□□□ -0.68
PDGFC-201ENST00000274071 TTC22Q5TAA0 569 aa10.77□□□□□ -0.68
PDGFC-201ENST00000274071 TACO1Q9BSH4 297 aaKnown RBP10.77□□□□□ -0.68
PDGFC-201ENST00000274071 SETBP1Q9Y6X0 1596 aa10.77□□□□□ -0.68
PDGFC-201ENST00000274071 SGSM2O43147 1006 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 ERLIN2O94905 339 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 GBP6Q6ZN66 633 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 SIRT2Q8IXJ6 389 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 ZNF513Q8N8E2 541 aaPredicted RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 STAG1Q8WVM7 1258 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 TATDN2Q93075 761 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 PLEKHA4Q9H4M7 779 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 C1orf115Q9H7X2 142 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 CCDC69A6NI79 296 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 CT47B1P0C2W7 299 aaPredicted RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 RBM5P52756 815 aaKnown RBP eCLIP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 IRX1P78414 480 aaPredicted RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 EXOSC9Q06265 439 aaKnown RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 CAMK4Q16566 473 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 FBXO31Q5XUX0 539 aaPredicted RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 FBXW10Q5XX13 1052 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 CPLX2Q6PUV4 134 aaKnown RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 TDRD7Q8NHU6 1098 aaKnown RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 ARFGAP3Q9NP61 516 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 ERVK-7P63135 1459 aa10.77□□□□□ -0.69
PDGFC-201ENST00000274071 KDM5AP29375 1690 aaKnown RBP10.77□□□□□ -0.69
PDGFC-201ENST00000274071 TADA3O75528 432 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 CDC25BP30305 580 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 ELF1P32519 619 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 USP8P40818 1118 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 CCDC27Q2M243 656 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 MORC1Q86VD1 984 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 EFCAB8A8MWE9 144 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 TBC1D8BQ0IIM8 1120 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 MAP3K11Q16584 847 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 CCDC30Q5VVM6 783 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 NBPF3Q9H094 633 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 AKAP2Q9Y2D5 859 aa10.76□□□□□ -0.69
PDGFC-201ENST00000274071 ERCC3P19447 782 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 SCRN1Q12765 414 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 E4F1Q66K89 784 aaPredicted RBP10.75□□□□□ -0.69
PDGFC-201ENST00000274071 A1CFQ9NQ94 594 aaKnown RBP10.75□□□□□ -0.69
PDGFC-201ENST00000274071 RPS6KL1Q9Y6S9 549 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 MYOM1P52179 1685 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 ZBTB7BO15156 539 aaPredicted RBP10.75□□□□□ -0.69
PDGFC-201ENST00000274071 ZSCAN22P10073 491 aaPredicted RBP10.75□□□□□ -0.69
PDGFC-201ENST00000274071 SDSP20132 328 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 EIF5P55010 431 aaKnown RBP10.75□□□□□ -0.69
PDGFC-201ENST00000274071 JAKMIP3Q5VZ66 844 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 ERC1Q8IUD2 1116 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 CKAP2LQ8IYA6 745 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 C16orf71Q8IYS4 520 aaPredicted RBP10.75□□□□□ -0.69
PDGFC-201ENST00000274071 CTCFLQ8NI51 663 aaPredicted RBP10.75□□□□□ -0.69
PDGFC-201ENST00000274071 USP16Q9Y5T5 823 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 NEXMIFQ5QGS0 1516 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 SBNO2Q9Y2G9 1366 aa10.75□□□□□ -0.69
PDGFC-201ENST00000274071 ADGRB1O14514 1584 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 LIG3P49916 1009 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 PPP1R13BQ96KQ4 1090 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 PREX1Q8TCU6 1659 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 MYO3AQ8NEV4 1616 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 MAP2K7O14733 419 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 CAND2O75155 1236 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 PPFIA4O75335 1185 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 ECM2O94769 699 aaPredicted RBP10.74□□□□□ -0.69
PDGFC-201ENST00000274071 NEDD9Q14511 834 aa10.74□□□□□ -0.69
PDGFC-201ENST00000274071 PRPF38AQ8NAV1 312 aaKnown RBP10.74□□□□□ -0.69
PDGFC-201ENST00000274071 SENP3Q9H4L4 574 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms