RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 ZBTB3Q9H5J0 574 aa12.74□□□□□ -0.37
VPS41-201ENST00000265745 AFDNP55196 1824 aaKnown RBP12.74□□□□□ -0.37
VPS41-201ENST00000265745 SCN7AQ01118 1682 aa12.73□□□□□ -0.37
VPS41-201ENST00000265745 GPTP24298 496 aa12.73□□□□□ -0.37
VPS41-201ENST00000265745 ALDH1B1P30837 517 aa12.73□□□□□ -0.37
VPS41-201ENST00000265745 FSTL1Q12841 308 aa12.73□□□□□ -0.37
VPS41-201ENST00000265745 CRY2Q49AN0 593 aa12.73□□□□□ -0.37
VPS41-201ENST00000265745 SUSD4Q5VX71 490 aa12.73□□□□□ -0.37
VPS41-201ENST00000265745 DPY19L2Q6NUT2 758 aa12.73□□□□□ -0.37
VPS41-201ENST00000265745 ARFGEF1Q9Y6D6 1849 aa12.72□□□□□ -0.37
VPS41-201ENST00000265745 UBN2Q6ZU65 1347 aa12.72□□□□□ -0.37
VPS41-201ENST00000265745 POTECB2RU33 542 aa12.72□□□□□ -0.37
VPS41-201ENST00000265745 ANXA1P04083 346 aa12.72□□□□□ -0.37
VPS41-201ENST00000265745 CCDC93Q567U6 631 aa12.72□□□□□ -0.37
VPS41-201ENST00000265745 KRT24Q2M2I5 525 aa12.71□□□□□ -0.37
VPS41-201ENST00000265745 OLFM4Q6UX06 510 aa12.71□□□□□ -0.37
VPS41-201ENST00000265745 COPS6Q7L5N1 327 aa12.71□□□□□ -0.37
VPS41-201ENST00000265745 RTKN2Q8IZC4 609 aa12.71□□□□□ -0.37
VPS41-201ENST00000265745 DNAJC5GQ8N7S2 189 aa12.71□□□□□ -0.37
VPS41-201ENST00000265745 NECTIN2Q92692 538 aa12.71□□□□□ -0.37
VPS41-201ENST00000265745 TSHZ2Q9NRE2 1034 aa12.71□□□□□ -0.37
VPS41-201ENST00000265745 LAS1LQ9Y4W2 734 aaKnown RBP12.71□□□□□ -0.37
VPS41-201ENST00000265745 ABCC12Q96J65 1359 aa12.7□□□□□ -0.38
VPS41-201ENST00000265745 NTSR2O95665 410 aa12.7□□□□□ -0.38
VPS41-201ENST00000265745 HOXA10P31260 410 aaPredicted RBP12.7□□□□□ -0.38
VPS41-201ENST00000265745 PARP10Q53GL7 1025 aa12.7□□□□□ -0.38
VPS41-201ENST00000265745 SMC1BQ8NDV3 1235 aa12.7□□□□□ -0.38
VPS41-201ENST00000265745 XAGE3Q8WTP9 111 aa12.7□□□□□ -0.38
VPS41-201ENST00000265745 DDX21Q9NR30 783 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS41-201ENST00000265745 IBTKQ9P2D0 1353 aaPredicted RBP12.69□□□□□ -0.38
VPS41-201ENST00000265745 FKBP4Q02790 459 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS41-201ENST00000265745 SLC10A5Q5PT55 438 aa12.69□□□□□ -0.38
VPS41-201ENST00000265745 PPP1R42Q7Z4L9 355 aa12.69□□□□□ -0.38
VPS41-201ENST00000265745 UTP14AQ9BVJ6 771 aaKnown RBP12.69□□□□□ -0.38
VPS41-201ENST00000265745 ZNF277Q9NRM2 450 aaPredicted RBP12.69□□□□□ -0.38
VPS41-201ENST00000265745 APAF1O14727 1248 aa12.68□□□□□ -0.38
VPS41-201ENST00000265745 DDNO94850 711 aaPredicted RBP12.68□□□□□ -0.38
VPS41-201ENST00000265745 HOXB7P09629 217 aa12.68□□□□□ -0.38
VPS41-201ENST00000265745 AIMP1Q12904 312 aaKnown RBP12.68□□□□□ -0.38
VPS41-201ENST00000265745 C3orf67Q6ZVT6 689 aa12.68□□□□□ -0.38
VPS41-201ENST00000265745 RPGRQ92834 1020 aaKnown RBP12.68□□□□□ -0.38
VPS41-201ENST00000265745 ANKRD31Q8N7Z5 1873 aa12.68□□□□□ -0.38
VPS41-201ENST00000265745 ZNF853P0CG23 659 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 TCIRG1Q13488 830 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 HSP90AB3PQ58FF7 597 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 CC2D2BQ6DHV5 1058 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 SYNE4Q8N205 404 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 RBM17Q96I25 401 aaKnown RBP12.67□□□□□ -0.38
VPS41-201ENST00000265745 NLRP3Q96P20 1036 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 CRAMP1Q96RY5 1269 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 CHPF2Q9P2E5 772 aa12.67□□□□□ -0.38
VPS41-201ENST00000265745 BCORQ6W2J9 1755 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 KDM3BQ7LBC6 1761 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 RIC1Q4ADV7 1423 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 HTRA3P83110 453 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 HDGFL1Q5TGJ6 251 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 DUSP27Q5VZP5 1158 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 NLRP10Q86W26 655 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 PSMD1Q99460 953 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 MBIPQ9NS73 344 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 DBF4Q9UBU7 674 aaPredicted RBP12.66□□□□□ -0.38
VPS41-201ENST00000265745 DLEC1Q9Y238 1755 aa12.66□□□□□ -0.38
VPS41-201ENST00000265745 IARSP41252 1262 aaKnown RBP12.65□□□□□ -0.38
VPS41-201ENST00000265745 GRIPAP1Q4V328 841 aa12.65□□□□□ -0.38
VPS41-201ENST00000265745 ANKRD13DQ6ZTN6 518 aa12.65□□□□□ -0.38
VPS41-201ENST00000265745 L3MBTL3Q96JM7 780 aaPredicted RBP12.65□□□□□ -0.38
VPS41-201ENST00000265745 IFT57Q9NWB7 429 aa12.65□□□□□ -0.38
VPS41-201ENST00000265745 COL11A2P13942 1736 aaPredicted RBP12.65□□□□□ -0.38
VPS41-201ENST00000265745 SLX4Q8IY92 1834 aa12.65□□□□□ -0.39
VPS41-201ENST00000265745 SBF1O95248 1867 aa12.64□□□□□ -0.39
VPS41-201ENST00000265745 FZD9O00144 591 aa12.64□□□□□ -0.39
VPS41-201ENST00000265745 HCLS1P14317 486 aaPredicted RBP12.64□□□□□ -0.39
VPS41-201ENST00000265745 ZEB1P37275 1124 aaPredicted RBP12.64□□□□□ -0.39
VPS41-201ENST00000265745 CCDC184Q52MB2 194 aa12.64□□□□□ -0.39
VPS41-201ENST00000265745 PLBD2Q8NHP8 589 aa12.64□□□□□ -0.39
VPS41-201ENST00000265745 HYPKQ9NX55 129 aa12.64□□□□□ -0.39
VPS41-201ENST00000265745 TRMT112Q9UI30 125 aaKnown RBP12.64□□□□□ -0.39
VPS41-201ENST00000265745 RNF123Q5XPI4 1314 aa12.63□□□□□ -0.39
VPS41-201ENST00000265745 SNED1Q8TER0 1413 aa12.63□□□□□ -0.39
VPS41-201ENST00000265745 DLG5Q8TDM6 1919 aa12.63□□□□□ -0.39
VPS41-201ENST00000265745 IQCA1LA6NCM1 817 aa12.63□□□□□ -0.39
VPS41-201ENST00000265745 TCERG1O14776 1098 aaKnown RBP12.63□□□□□ -0.39
VPS41-201ENST00000265745 PPEF1O14829 653 aaPredicted RBP12.63□□□□□ -0.39
VPS41-201ENST00000265745 GNAI1P63096 354 aa12.63□□□□□ -0.39
VPS41-201ENST00000265745 CALD1Q05682 793 aaKnown RBP12.63□□□□□ -0.39
VPS41-201ENST00000265745 SLC51AQ86UW1 340 aa12.63□□□□□ -0.39
VPS41-201ENST00000265745 KLRG1Q96E93 195 aa12.63□□□□□ -0.39
VPS41-201ENST00000265745 SH3TC1Q8TE82 1336 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 ZNF541Q9H0D2 1346 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 BBOX1O75936 387 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 POTEIP0CG38 1075 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 POTEJP0CG39 1038 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 CHADLQ6NUI6 762 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 JDP2Q8WYK2 163 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 ISCA1Q9BUE6 129 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 TAF1DQ9H5J8 278 aaPredicted RBP12.62□□□□□ -0.39
VPS41-201ENST00000265745 ATP6V0A2Q9Y487 856 aa12.62□□□□□ -0.39
VPS41-201ENST00000265745 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
VPS41-201ENST00000265745 ELL2O00472 640 aaPredicted RBP12.61□□□□□ -0.39
VPS41-201ENST00000265745 TRIM28Q13263 835 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms