RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 VPS53Q5VIR6 699 aa8.5□□□□□ -1.05
CSDE1-201ENST00000261443 CCDC191Q8NCU4 936 aa8.5□□□□□ -1.05
CSDE1-201ENST00000261443 SMARCE1Q969G3 411 aa8.5□□□□□ -1.05
CSDE1-201ENST00000261443 JAKMIP1Q96N16 626 aaKnown RBP8.5□□□□□ -1.05
CSDE1-201ENST00000261443 IL1RAPL2Q9NP60 686 aa8.5□□□□□ -1.05
CSDE1-201ENST00000261443 MAP2P11137 1827 aaKnown RBP8.5□□□□□ -1.05
CSDE1-201ENST00000261443 TSPOAP1O95153 1857 aa8.5□□□□□ -1.05
CSDE1-201ENST00000261443 AOX1Q06278 1338 aa8.5□□□□□ -1.05
CSDE1-201ENST00000261443 YTHDC2Q9H6S0 1430 aaKnown RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 BECN2A8MW95 431 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 MYO1CO00159 1063 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 ZRANB2O95218 330 aaKnown RBP eCLIP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 IQCB1Q15051 598 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 ZSCAN26Q16670 478 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 GORABQ5T7V8 394 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 NUTM1Q86Y26 1132 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 NFATC2IPQ8NCF5 419 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 UBXN4Q92575 508 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 SYTL4Q96C24 671 aaPredicted RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 TMX1Q9H3N1 280 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 KCND1Q9NSA2 647 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 CABP1Q9NZU7 370 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 CWC15Q9P013 229 aaKnown RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 SPG7Q9UQ90 795 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.49□□□□□ -1.054e-11■□□□□ 9.7
CSDE1-201ENST00000261443 SPATA31D1Q6ZQQ2 1576 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 TRIM66O15016 1216 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 DHX16O60231 1041 aaKnown RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 NOP2P46087 812 aaKnown RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 CWC27Q6UX04 472 aaKnown RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 LEO1Q8WVC0 666 aaPredicted RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 YY1AP1Q9H869 796 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 CYP46A1Q9Y6A2 500 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 TTC21BQ7Z4L5 1316 aa8.49□□□□□ -1.05
CSDE1-201ENST00000261443 CDK12Q9NYV4 1490 aaPredicted RBP8.49□□□□□ -1.05
CSDE1-201ENST00000261443 PDCP20941 246 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 CASQ1P31415 396 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 GTF2A1P52655 376 aaPredicted RBP8.48□□□□□ -1.05
CSDE1-201ENST00000261443 ATP8B2P98198 1209 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 ME3Q16798 604 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 CCDC93Q567U6 631 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 CHL1O00533 1208 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 GSDMDP57764 484 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 ST3GAL1Q11201 340 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 CTR9Q6PD62 1173 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 C11orf57Q6ZUT1 292 aaPredicted RBP8.48□□□□□ -1.05
CSDE1-201ENST00000261443 G2E3Q7L622 706 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 ZCCHC17Q9NP64 241 aaKnown RBP8.48□□□□□ -1.05
CSDE1-201ENST00000261443 LCMT1Q9UIC8 334 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 PPP6R1Q9UPN7 881 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 A2ML1A8K2U0 1454 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 GNAI3P08754 354 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 OAS2P29728 719 aaKnown RBP8.48□□□□□ -1.05
CSDE1-201ENST00000261443 ADCK5Q3MIX3 580 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 CNTROBQ8N137 903 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 PPP1R13BQ96KQ4 1090 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 ORC3Q9UBD5 711 aaPredicted RBP8.48□□□□□ -1.05
CSDE1-201ENST00000261443 AATKQ6ZMQ8 1374 aa8.48□□□□□ -1.05
CSDE1-201ENST00000261443 SEC31AO94979 1220 aaKnown RBP8.47□□□□□ -1.05
CSDE1-201ENST00000261443 GYS2P54840 703 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 MNS1Q8NEH6 495 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 GEMIN8Q9NWZ8 242 aaKnown RBP8.47□□□□□ -1.05
CSDE1-201ENST00000261443 STX1AQ16623 288 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 E4F1Q66K89 784 aaPredicted RBP8.47□□□□□ -1.05
CSDE1-201ENST00000261443 PRPF40BQ6NWY9 871 aaKnown RBP8.47□□□□□ -1.05
CSDE1-201ENST00000261443 MCM10Q7L590 875 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 HOMER1Q86YM7 354 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 DDX54Q8TDD1 881 aaKnown RBP8.47□□□□□ -1.05
CSDE1-201ENST00000261443 PGBD1Q96JS3 809 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 AK7Q96M32 723 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 PRAM1Q96QH2 718 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 KIF13AQ9H1H9 1805 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 ZSWIM6Q9HCJ5 1215 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 STAG3Q9UJ98 1225 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 AGLP35573 1532 aa8.47□□□□□ -1.05
CSDE1-201ENST00000261443 ATP8B1O43520 1251 aa8.46□□□□□ -1.05
CSDE1-201ENST00000261443 GOLGA6L1Q8N7Z2 621 aa8.46□□□□□ -1.05
CSDE1-201ENST00000261443 TPCN1Q9ULQ1 816 aa8.46□□□□□ -1.05
CSDE1-201ENST00000261443 CHRM1P11229 460 aaPredicted RBP8.46□□□□□ -1.06
CSDE1-201ENST00000261443 SMC1AQ14683 1233 aaKnown RBP8.46□□□□□ -1.06
CSDE1-201ENST00000261443 GOLGA5Q8TBA6 731 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 CHMP4CQ96CF2 233 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 CDK19Q9BWU1 502 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 PSDA5PKW4 1024 aaPredicted RBP8.46□□□□□ -1.06
CSDE1-201ENST00000261443 TUBB4AP04350 444 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 NPM1P06748 294 aaKnown RBP eCLIP8.46□□□□□ -1.06
CSDE1-201ENST00000261443 ICE2Q659A1 982 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 SRLQ86TD4 932 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 FBXO18Q8NFZ0 1043 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 PI4K2BQ8TCG2 481 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 TM6SF1Q9BZW5 370 aa8.46□□□□□ -1.06
CSDE1-201ENST00000261443 RRP15Q9Y3B9 282 aaKnown RBP8.46□□□□□ -1.06
CSDE1-201ENST00000261443 NRDCO43847 1150 aa8.45□□□□□ -1.06
CSDE1-201ENST00000261443 TPM1P09493 284 aa8.45□□□□□ -1.06
CSDE1-201ENST00000261443 PTH1RQ03431 593 aa8.45□□□□□ -1.06
CSDE1-201ENST00000261443 LARP1Q6PKG0 1096 aaKnown RBP8.45□□□□□ -1.06
CSDE1-201ENST00000261443 SECISBP2LQ93073 1101 aaKnown RBP8.45□□□□□ -1.06
CSDE1-201ENST00000261443 CCDC34Q96HJ3 373 aa8.45□□□□□ -1.06
CSDE1-201ENST00000261443 UBXN6Q9BZV1 441 aa8.45□□□□□ -1.06
CSDE1-201ENST00000261443 IMPACTQ9P2X3 320 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms