RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CCDC30Q5VVM6 783 aa29.65■■■□□ 2.34
LSM4-201ENST00000252816 SPINK5Q9NQ38 1064 aaPredicted RBP29.64■■■□□ 2.34
LSM4-201ENST00000252816 RNF181Q9P0P0 153 aa29.64■■■□□ 2.34
LSM4-201ENST00000252816 ARFGEF2Q9Y6D5 1785 aa29.63■■■□□ 2.33
LSM4-201ENST00000252816 TWISTNBQ3B726 338 aaPredicted RBP29.63■■■□□ 2.33
LSM4-201ENST00000252816 C3orf67Q6ZVT6 689 aa29.63■■■□□ 2.33
LSM4-201ENST00000252816 SBF1O95248 1867 aa29.63■■■□□ 2.33
LSM4-201ENST00000252816 CACNA1SQ13698 1873 aa29.63■■■□□ 2.33
LSM4-201ENST00000252816 C7orf43Q8WVR3 580 aa29.62■■■□□ 2.33
LSM4-201ENST00000252816 ZNF428Q96B54 188 aa29.62■■■□□ 2.33
LSM4-201ENST00000252816 ISCA1Q9BUE6 129 aa29.62■■■□□ 2.33
LSM4-201ENST00000252816 GPBP1L1Q9HC44 474 aaPredicted RBP29.62■■■□□ 2.33
LSM4-201ENST00000252816 SLC10A5Q5PT55 438 aa29.61■■■□□ 2.33
LSM4-201ENST00000252816 SYNE4Q8N205 404 aa29.61■■■□□ 2.33
LSM4-201ENST00000252816 CHMP4AQ9BY43 222 aa29.61■■■□□ 2.33
LSM4-201ENST00000252816 ATP5J2-PTCD1G3V325 749 aa29.6■■■□□ 2.33
LSM4-201ENST00000252816 TCERG1O14776 1098 aaKnown RBP29.6■■■□□ 2.33
LSM4-201ENST00000252816 LMNB1P20700 586 aa29.59■■■□□ 2.33
LSM4-201ENST00000252816 GOLGA2Q08379 1002 aa29.59■■■□□ 2.33
LSM4-201ENST00000252816 TRMT112Q9UI30 125 aaKnown RBP29.59■■■□□ 2.33
LSM4-201ENST00000252816 RNF123Q5XPI4 1314 aa29.59■■■□□ 2.33
LSM4-201ENST00000252816 ALDH1B1P30837 517 aa29.58■■■□□ 2.33
LSM4-201ENST00000252816 HOXA10P31260 410 aaPredicted RBP29.58■■■□□ 2.33
LSM4-201ENST00000252816 RIC3Q7Z5B4 369 aa29.58■■■□□ 2.33
LSM4-201ENST00000252816 FER1L6Q2WGJ9 1857 aa29.57■■■□□ 2.32
LSM4-201ENST00000252816 ZNF521Q96K83 1311 aa29.57■■■□□ 2.32
LSM4-201ENST00000252816 OLFM4Q6UX06 510 aa29.57■■■□□ 2.32
LSM4-201ENST00000252816 RPGRQ92834 1020 aaKnown RBP29.57■■■□□ 2.32
LSM4-201ENST00000252816 CCER2I3L3R5 266 aa29.56■■■□□ 2.32
LSM4-201ENST00000252816 HCLS1P14317 486 aaPredicted RBP29.56■■■□□ 2.32
LSM4-201ENST00000252816 EXOSC9Q06265 439 aaKnown RBP29.56■■■□□ 2.32
LSM4-201ENST00000252816 SOGA3Q5TF21 947 aa29.56■■■□□ 2.32
LSM4-201ENST00000252816 NLRP3Q96P20 1036 aa29.56■■■□□ 2.32
LSM4-201ENST00000252816 SH3TC1Q8TE82 1336 aa29.55■■■□□ 2.32
LSM4-201ENST00000252816 STK31Q9BXU1 1019 aa29.55■■■□□ 2.32
LSM4-201ENST00000252816 LTBP3Q9NS15 1303 aa29.54■■■□□ 2.32
LSM4-201ENST00000252816 TRIM28Q13263 835 aaKnown RBP29.54■■■□□ 2.32
LSM4-201ENST00000252816 TAOK3Q9H2K8 898 aa29.54■■■□□ 2.32
LSM4-201ENST00000252816 VAMP4O75379 141 aa29.53■■■□□ 2.32
LSM4-201ENST00000252816 CCDC93Q567U6 631 aa29.53■■■□□ 2.32
LSM4-201ENST00000252816 G2E3Q7L622 706 aa29.52■■■□□ 2.32
LSM4-201ENST00000252816 RBM17Q96I25 401 aaKnown RBP29.52■■■□□ 2.32
LSM4-201ENST00000252816 CRAMP1Q96RY5 1269 aa29.52■■■□□ 2.32
LSM4-201ENST00000252816 MYD88Q99836 296 aa29.52■■■□□ 2.32
LSM4-201ENST00000252816 CCDC88AQ3V6T2 1871 aa29.51■■■□□ 2.31
LSM4-201ENST00000252816 DDX58O95786 925 aaKnown RBP29.51■■■□□ 2.31
LSM4-201ENST00000252816 SLC4A2P04920 1241 aa29.51■■■□□ 2.31
LSM4-201ENST00000252816 FAM89AQ96GI7 184 aa29.51■■■□□ 2.31
LSM4-201ENST00000252816 MYH16Q9H6N6 1097 aa29.51■■■□□ 2.31
LSM4-201ENST00000252816 C1QTNF8P60827 252 aa29.5■■■□□ 2.31
LSM4-201ENST00000252816 SLC51AQ86UW1 340 aa29.5■■■□□ 2.31
LSM4-201ENST00000252816 ZC3H4Q9UPT8 1303 aaKnown RBP29.49■■■□□ 2.31
LSM4-201ENST00000252816 KIF3CO14782 793 aa29.49■■■□□ 2.31
LSM4-201ENST00000252816 METTL22Q9BUU2 404 aaPredicted RBP29.49■■■□□ 2.31
LSM4-201ENST00000252816 MAP3K2Q9Y2U5 619 aa29.49■■■□□ 2.31
LSM4-201ENST00000252816 SNED1Q8TER0 1413 aa29.48■■■□□ 2.31
LSM4-201ENST00000252816 PI4KAP2A4QPH2 592 aa29.48■■■□□ 2.31
LSM4-201ENST00000252816 RTL5Q5HYW3 569 aaPredicted RBP29.48■■■□□ 2.31
LSM4-201ENST00000252816 KSR2Q6VAB6 950 aa29.48■■■□□ 2.31
LSM4-201ENST00000252816 PI4KAP1Q8N8J0 262 aa29.48■■■□□ 2.31
LSM4-201ENST00000252816 NMRK2Q9NPI5 230 aa29.48■■■□□ 2.31
LSM4-201ENST00000252816 LAMB2P55268 1798 aa29.48■■■□□ 2.31
LSM4-201ENST00000252816 RTKN2Q8IZC4 609 aa29.47■■■□□ 2.31
LSM4-201ENST00000252816 ABCC4O15439 1325 aa29.46■■■□□ 2.31
LSM4-201ENST00000252816 FKBP4Q02790 459 aaKnown RBP eCLIP29.46■■■□□ 2.31
LSM4-201ENST00000252816 TIAM2Q8IVF5 1701 aa29.45■■■□□ 2.31
LSM4-201ENST00000252816 DDX60Q8IY21 1712 aaKnown RBP29.45■■■□□ 2.31
LSM4-201ENST00000252816 PPEF1O14829 653 aaPredicted RBP29.45■■■□□ 2.31
LSM4-201ENST00000252816 CCDC191Q8NCU4 936 aa29.45■■■□□ 2.31
LSM4-201ENST00000252816 FLIIQ13045 1269 aa29.44■■■□□ 2.3
LSM4-201ENST00000252816 DIEXFQ68CQ4 756 aaKnown RBP29.44■■■□□ 2.3
LSM4-201ENST00000252816 ZBTB38Q8NAP3 1195 aaPredicted RBP29.44■■■□□ 2.3
LSM4-201ENST00000252816 ZNF277Q9NRM2 450 aaPredicted RBP29.44■■■□□ 2.3
LSM4-201ENST00000252816 KDM2BQ8NHM5 1336 aa29.44■■■□□ 2.3
LSM4-201ENST00000252816 IRS4O14654 1257 aaPredicted RBP29.43■■■□□ 2.3
LSM4-201ENST00000252816 IGKV5-2P06315 115 aa29.43■■■□□ 2.3
LSM4-201ENST00000252816 CC2D2BQ6DHV5 1058 aa29.43■■■□□ 2.3
LSM4-201ENST00000252816 CWC25Q9NXE8 425 aaPredicted RBP29.43■■■□□ 2.3
LSM4-201ENST00000252816 DICER1Q9UPY3 1922 aaKnown RBP29.43■■■□□ 2.3
LSM4-201ENST00000252816 GLTPD2A6NH11 291 aa29.41■■■□□ 2.3
LSM4-201ENST00000252816 SF3B3Q15393 1217 aaKnown RBP29.41■■■□□ 2.3
LSM4-201ENST00000252816 DDX46Q7L014 1031 aaKnown RBP29.41■■■□□ 2.3
LSM4-201ENST00000252816 JARID2Q92833 1246 aaPredicted RBP29.41■■■□□ 2.3
LSM4-201ENST00000252816 MIER1Q8N108 512 aa29.4■■■□□ 2.3
LSM4-201ENST00000252816 PSMD1Q99460 953 aa29.4■■■□□ 2.3
LSM4-201ENST00000252816 ATP6V0A2Q9Y487 856 aa29.4■■■□□ 2.3
LSM4-201ENST00000252816 PCCAP05165 728 aaPredicted RBP29.39■■■□□ 2.3
LSM4-201ENST00000252816 FKBP5Q13451 457 aaPredicted RBP29.39■■■□□ 2.3
LSM4-201ENST00000252816 BBOX1O75936 387 aa29.38■■■□□ 2.29
LSM4-201ENST00000252816 GRAPQ13588 217 aa29.38■■■□□ 2.29
LSM4-201ENST00000252816 GRAPLQ8TC17 118 aaPredicted RBP29.38■■■□□ 2.29
LSM4-201ENST00000252816 RRAGCQ9HB90 399 aa29.38■■■□□ 2.29
LSM4-201ENST00000252816 CACNA1FO60840 1977 aa29.37■■■□□ 2.29
LSM4-201ENST00000252816 E9PSI1 815 aa29.37■■■□□ 2.29
LSM4-201ENST00000252816 NEXNQ0ZGT2 675 aa29.37■■■□□ 2.29
LSM4-201ENST00000252816 CWF19L2Q2TBE0 894 aaKnown RBP29.37■■■□□ 2.29
LSM4-201ENST00000252816 TAF1P21675 1872 aa29.36■■■□□ 2.29
LSM4-201ENST00000252816 NEURL1BA8MQ27 555 aa29.36■■■□□ 2.29
LSM4-201ENST00000252816 IARSP41252 1262 aaKnown RBP29.36■■■□□ 2.29
LSM4-201ENST00000252816 SLFN5Q08AF3 891 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms