RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 ZNF652Q9Y2D9 606 aa13.71□□□□□ -0.21
VPS50-201ENST00000251739 RIC1Q4ADV7 1423 aa13.71□□□□□ -0.22
VPS50-201ENST00000251739 HTRA3P83110 453 aa13.7□□□□□ -0.22
VPS50-201ENST00000251739 NBPF5PQ86XG9 351 aaPredicted RBP13.7□□□□□ -0.22
VPS50-201ENST00000251739 KLRG1Q96E93 195 aa13.7□□□□□ -0.22
VPS50-201ENST00000251739 TAOK3Q9H2K8 898 aa13.7□□□□□ -0.22
VPS50-201ENST00000251739 ANKRD36CQ5JPF3 1778 aa13.69□□□□□ -0.22
VPS50-201ENST00000251739 NFE2L2Q16236 605 aa13.69□□□□□ -0.22
VPS50-201ENST00000251739 SOGA3Q5TF21 947 aa13.69□□□□□ -0.22
VPS50-201ENST00000251739 IBTKQ9P2D0 1353 aaPredicted RBP13.69□□□□□ -0.22
VPS50-201ENST00000251739 ADAMTSL1Q8N6G6 1762 aa13.68□□□□□ -0.22
VPS50-201ENST00000251739 HLFQ16534 295 aa13.68□□□□□ -0.22
VPS50-201ENST00000251739 ERFEQ4G0M1 354 aa13.68□□□□□ -0.22
VPS50-201ENST00000251739 MIS18AQ9NYP9 233 aa13.68□□□□□ -0.22
VPS50-201ENST00000251739 NIP7Q9Y221 180 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS50-201ENST00000251739 ABCC12Q96J65 1359 aa13.68□□□□□ -0.22
VPS50-201ENST00000251739 NPR1P16066 1061 aa13.67□□□□□ -0.22
VPS50-201ENST00000251739 EIF4A1P60842 406 aaKnown RBP13.67□□□□□ -0.22
VPS50-201ENST00000251739 PNISRQ8TF01 805 aaKnown RBP13.67□□□□□ -0.22
VPS50-201ENST00000251739 ERVV-1B6SEH8 477 aa13.66□□□□□ -0.22
VPS50-201ENST00000251739 NPHP1O15259 732 aa13.66□□□□□ -0.22
VPS50-201ENST00000251739 MAP3K13O43283 966 aa13.66□□□□□ -0.22
VPS50-201ENST00000251739 CLCN6P51797 869 aa13.66□□□□□ -0.22
VPS50-201ENST00000251739 CRY2Q49AN0 593 aa13.66□□□□□ -0.22
VPS50-201ENST00000251739 TPTE2Q6XPS3 522 aa13.66□□□□□ -0.22
VPS50-201ENST00000251739 THUMPD2Q9BTF0 503 aaKnown RBP13.66□□□□□ -0.22
VPS50-201ENST00000251739 LAMB2P55268 1798 aa13.66□□□□□ -0.22
VPS50-201ENST00000251739 MAP3K15Q6ZN16 1313 aa13.65□□□□□ -0.22
VPS50-201ENST00000251739 CCDC93Q567U6 631 aa13.65□□□□□ -0.22
VPS50-201ENST00000251739 DPY19L2Q6NUT2 758 aa13.65□□□□□ -0.22
VPS50-201ENST00000251739 LRP10Q7Z4F1 713 aa13.65□□□□□ -0.22
VPS50-201ENST00000251739 L3MBTL3Q96JM7 780 aaPredicted RBP13.65□□□□□ -0.22
VPS50-201ENST00000251739 ERBB4Q15303 1308 aa13.64□□□□□ -0.23
VPS50-201ENST00000251739 COL4A5P29400 1685 aa13.64□□□□□ -0.23
VPS50-201ENST00000251739 TTLL7Q6ZT98 887 aa13.64□□□□□ -0.23
VPS50-201ENST00000251739 RNF25Q96BH1 459 aaPredicted RBP13.64□□□□□ -0.23
VPS50-201ENST00000251739 UBN2Q6ZU65 1347 aa13.64□□□□□ -0.23
VPS50-201ENST00000251739 DDNO94850 711 aaPredicted RBP13.63□□□□□ -0.23
VPS50-201ENST00000251739 NEFMP07197 916 aa13.63□□□□□ -0.23
VPS50-201ENST00000251739 FKBP4Q02790 459 aaKnown RBP eCLIP13.63□□□□□ -0.23
VPS50-201ENST00000251739 OLFM4Q6UX06 510 aa13.63□□□□□ -0.23
VPS50-201ENST00000251739 POTEIP0CG38 1075 aa13.62□□□□□ -0.23
VPS50-201ENST00000251739 POTEJP0CG39 1038 aa13.62□□□□□ -0.23
VPS50-201ENST00000251739 HOXA10P31260 410 aaPredicted RBP13.62□□□□□ -0.23
VPS50-201ENST00000251739 NYXQ9GZU5 481 aa13.62□□□□□ -0.23
VPS50-201ENST00000251739 PCDHB13Q9Y5F0 798 aa13.62□□□□□ -0.23
VPS50-201ENST00000251739 ZNF541Q9H0D2 1346 aa13.62□□□□□ -0.23
VPS50-201ENST00000251739 MAPK8IP3Q9UPT6 1336 aa13.62□□□□□ -0.23
VPS50-201ENST00000251739 FAM177BA6PVY3 158 aa13.61□□□□□ -0.23
VPS50-201ENST00000251739 PDIA6Q15084 440 aa13.61□□□□□ -0.23
VPS50-201ENST00000251739 NUTM1Q86Y26 1132 aa13.61□□□□□ -0.23
VPS50-201ENST00000251739 ZNF34Q8IZ26 560 aa13.61□□□□□ -0.23
VPS50-201ENST00000251739 RTKN2Q8IZC4 609 aa13.61□□□□□ -0.23
VPS50-201ENST00000251739 PNNQ9H307 717 aaKnown RBP13.61□□□□□ -0.23
VPS50-201ENST00000251739 LTBP1Q14766 1721 aa13.61□□□□□ -0.23
VPS50-201ENST00000251739 NTSR2O95665 410 aa13.6□□□□□ -0.23
VPS50-201ENST00000251739 ALDH1B1P30837 517 aa13.6□□□□□ -0.23
VPS50-201ENST00000251739 RALBP1Q15311 655 aa13.6□□□□□ -0.23
VPS50-201ENST00000251739 GIGYF2Q6Y7W6 1299 aaKnown RBP13.6□□□□□ -0.23
VPS50-201ENST00000251739 KIF6Q6ZMV9 814 aa13.6□□□□□ -0.23
VPS50-201ENST00000251739 ZNF467Q7Z7K2 595 aaPredicted RBP13.6□□□□□ -0.23
VPS50-201ENST00000251739 PSMD1Q99460 953 aa13.6□□□□□ -0.23
VPS50-201ENST00000251739 ZNF277Q9NRM2 450 aaPredicted RBP13.6□□□□□ -0.23
VPS50-201ENST00000251739 BABAM1Q9NWV8 329 aa13.6□□□□□ -0.23
VPS50-201ENST00000251739 RRP7AQ9Y3A4 280 aaKnown RBP13.6□□□□□ -0.23
VPS50-201ENST00000251739 IQCA1LA6NCM1 817 aa13.59□□□□□ -0.23
VPS50-201ENST00000251739 FZD9O00144 591 aa13.59□□□□□ -0.23
VPS50-201ENST00000251739 MYL6BP14649 208 aa13.59□□□□□ -0.23
VPS50-201ENST00000251739 NGEFQ8N5V2 710 aa13.59□□□□□ -0.23
VPS50-201ENST00000251739 ZBTB3Q9H5J0 574 aa13.59□□□□□ -0.23
VPS50-201ENST00000251739 TAF1DQ9H5J8 278 aaPredicted RBP13.59□□□□□ -0.23
VPS50-201ENST00000251739 PASKQ96RG2 1323 aa13.59□□□□□ -0.23
VPS50-201ENST00000251739 LRRC37AA6NMS7 1700 aa13.59□□□□□ -0.23
VPS50-201ENST00000251739 RIOK3O14730 519 aaKnown RBP13.58□□□□□ -0.24
VPS50-201ENST00000251739 GPTP24298 496 aa13.58□□□□□ -0.24
VPS50-201ENST00000251739 IARSP41252 1262 aaKnown RBP13.58□□□□□ -0.24
VPS50-201ENST00000251739 TMPOP42166 694 aaKnown RBP13.58□□□□□ -0.24
VPS50-201ENST00000251739 PROSER3Q2NL68 480 aa13.58□□□□□ -0.24
VPS50-201ENST00000251739 SUSD4Q5VX71 490 aa13.58□□□□□ -0.24
VPS50-201ENST00000251739 CC2D2BQ6DHV5 1058 aa13.58□□□□□ -0.24
VPS50-201ENST00000251739 C3orf67Q6ZVT6 689 aa13.58□□□□□ -0.24
VPS50-201ENST00000251739 SP7Q8TDD2 431 aaPredicted RBP13.58□□□□□ -0.24
VPS50-201ENST00000251739 MS4A3Q96HJ5 214 aa13.58□□□□□ -0.24
VPS50-201ENST00000251739 TSPYL4Q9UJ04 414 aa13.58□□□□□ -0.24
VPS50-201ENST00000251739 DDX60Q8IY21 1712 aaKnown RBP13.58□□□□□ -0.24
VPS50-201ENST00000251739 GTF2E1P29083 439 aaPredicted RBP13.57□□□□□ -0.24
VPS50-201ENST00000251739 RIPK4P57078 832 aa13.57□□□□□ -0.24
VPS50-201ENST00000251739 SLC51AQ86UW1 340 aa13.57□□□□□ -0.24
VPS50-201ENST00000251739 LDHDQ86WU2 507 aa13.57□□□□□ -0.24
VPS50-201ENST00000251739 IFNL1Q8IU54 200 aa13.57□□□□□ -0.24
VPS50-201ENST00000251739 SYNE4Q8N205 404 aa13.57□□□□□ -0.24
VPS50-201ENST00000251739 CRAMP1Q96RY5 1269 aa13.57□□□□□ -0.24
VPS50-201ENST00000251739 TAF1P21675 1872 aa13.57□□□□□ -0.24
VPS50-201ENST00000251739 PARP10Q53GL7 1025 aa13.56□□□□□ -0.24
VPS50-201ENST00000251739 COL13A1Q5TAT6 717 aaPredicted RBP13.56□□□□□ -0.24
VPS50-201ENST00000251739 RNF123Q5XPI4 1314 aa13.56□□□□□ -0.24
VPS50-201ENST00000251739 MYBBP1AQ9BQG0 1328 aaKnown RBP13.56□□□□□ -0.24
VPS50-201ENST00000251739 GABBR2O75899 941 aa13.55□□□□□ -0.24
VPS50-201ENST00000251739 ITGBL1O95965 494 aaPredicted RBP13.55□□□□□ -0.24
VPS50-201ENST00000251739 LMOD3Q0VAK6 560 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms