RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 POLA2Q14181 598 aa16.08■□□□□ 0.16
HIF3A-201ENST00000244302 TXNRD1Q16881 649 aa16.08■□□□□ 0.16
HIF3A-201ENST00000244302 CCDC191Q8NCU4 936 aa16.08■□□□□ 0.16
HIF3A-201ENST00000244302 BCL2L12Q9HB09 334 aa16.08■□□□□ 0.16
HIF3A-201ENST00000244302 FOXO4P98177 505 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 USPL1Q5W0Q7 1092 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 BICDL1Q6ZP65 573 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 ARHGEF1Q92888 912 aaKnown RBP16.07■□□□□ 0.16
HIF3A-201ENST00000244302 GCC1Q96CN9 775 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 CNTNAP4Q9C0A0 1308 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 COL5A3P25940 1745 aaPredicted RBP16.07■□□□□ 0.16
HIF3A-201ENST00000244302 RPS6KA4O75676 772 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 SURF6O75683 361 aaKnown RBP16.07■□□□□ 0.16
HIF3A-201ENST00000244302 SUSD4Q5VX71 490 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 ZNF34Q8IZ26 560 aa16.07■□□□□ 0.16
HIF3A-201ENST00000244302 IPO9Q96P70 1041 aaKnown RBP16.07■□□□□ 0.16
HIF3A-201ENST00000244302 AFDNP55196 1824 aaKnown RBP16.06■□□□□ 0.16
HIF3A-201ENST00000244302 ERVV-1B6SEH8 477 aa16.06■□□□□ 0.16
HIF3A-201ENST00000244302 LMBR1LQ6UX01 489 aa16.06■□□□□ 0.16
HIF3A-201ENST00000244302 IL1RAPL2Q9NP60 686 aa16.06■□□□□ 0.16
HIF3A-201ENST00000244302 SIL1Q9H173 461 aa16.06■□□□□ 0.16
HIF3A-201ENST00000244302 HMMRO75330 724 aa16.05■□□□□ 0.16
HIF3A-201ENST00000244302 TRIM28Q13263 835 aaKnown RBP16.05■□□□□ 0.16
HIF3A-201ENST00000244302 RC3H1Q5TC82 1133 aaKnown RBP16.05■□□□□ 0.16
HIF3A-201ENST00000244302 TSHZ3Q63HK5 1081 aa16.05■□□□□ 0.16
HIF3A-201ENST00000244302 NUTM1Q86Y26 1132 aa16.05■□□□□ 0.16
HIF3A-201ENST00000244302 CCDC24Q8N4L8 307 aa16.05■□□□□ 0.16
HIF3A-201ENST00000244302 RTCBQ9Y3I0 505 aaKnown RBP16.05■□□□□ 0.16
HIF3A-201ENST00000244302 LY75O60449 1722 aa16.05■□□□□ 0.16
HIF3A-201ENST00000244302 TRMT112Q9UI30 125 aaKnown RBP16.04■□□□□ 0.16
HIF3A-201ENST00000244302 NIP7Q9Y221 180 aaKnown RBP eCLIP16.04■□□□□ 0.16
HIF3A-201ENST00000244302 CHMP3Q9Y3E7 222 aa16.04■□□□□ 0.16
HIF3A-201ENST00000244302 MTX1Q13505 466 aa16.04■□□□□ 0.16
HIF3A-201ENST00000244302 TBC1D9BQ66K14 1250 aa16.04■□□□□ 0.16
HIF3A-201ENST00000244302 ZNF594Q96JF6 807 aaPredicted RBP16.04■□□□□ 0.16
HIF3A-201ENST00000244302 NUP98P52948 1817 aa16.04■□□□□ 0.16
HIF3A-201ENST00000244302 HCLS1P14317 486 aaPredicted RBP16.03■□□□□ 0.16
HIF3A-201ENST00000244302 ZNF827Q17R98 1081 aa16.03■□□□□ 0.16
HIF3A-201ENST00000244302 AK7Q96M32 723 aa16.03■□□□□ 0.16
HIF3A-201ENST00000244302 RREB1Q92766 1687 aa16.03■□□□□ 0.16
HIF3A-201ENST00000244302 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.03■□□□□ 0.16
HIF3A-201ENST00000244302 RFX5P48382 616 aaPredicted RBP16.03■□□□□ 0.16
HIF3A-201ENST00000244302 EN1Q05925 392 aaPredicted RBP16.03■□□□□ 0.16
HIF3A-201ENST00000244302 ZBTB38Q8NAP3 1195 aaPredicted RBP16.03■□□□□ 0.16
HIF3A-201ENST00000244302 RABL6Q3YEC7 729 aaPredicted RBP16.02■□□□□ 0.16
HIF3A-201ENST00000244302 TAF1LQ8IZX4 1826 aa16.02■□□□□ 0.15
HIF3A-201ENST00000244302 PCCAP05165 728 aaPredicted RBP16.01■□□□□ 0.15
HIF3A-201ENST00000244302 EZH2Q15910 746 aaKnown RBP16.01■□□□□ 0.15
HIF3A-201ENST00000244302 TRAPPC3LQ5T215 181 aa16.01■□□□□ 0.15
HIF3A-201ENST00000244302 NARFQ9UHQ1 456 aa16.01■□□□□ 0.15
HIF3A-201ENST00000244302 IBTKQ9P2D0 1353 aaPredicted RBP16.01■□□□□ 0.15
HIF3A-201ENST00000244302 PLSCR1O15162 318 aa16.01■□□□□ 0.15
HIF3A-201ENST00000244302 PTPN12Q05209 780 aaKnown RBP16.01■□□□□ 0.15
HIF3A-201ENST00000244302 DEFB132Q7Z7B7 95 aa16.01■□□□□ 0.15
HIF3A-201ENST00000244302 PLEKHM2Q8IWE5 1019 aa16.01■□□□□ 0.15
HIF3A-201ENST00000244302 CICQ96RK0 1608 aaPredicted RBP16.01■□□□□ 0.15
HIF3A-201ENST00000244302 C4BP0C0L5 1744 aa16.01■□□□□ 0.15
HIF3A-201ENST00000244302 IRS4O14654 1257 aaPredicted RBP16■□□□□ 0.15
HIF3A-201ENST00000244302 SASH1O94885 1247 aa16■□□□□ 0.15
HIF3A-201ENST00000244302 HSP90AB3PQ58FF7 597 aa16■□□□□ 0.15
HIF3A-201ENST00000244302 SLC27A3Q5K4L6 730 aa16■□□□□ 0.15
HIF3A-201ENST00000244302 ZNF831Q5JPB2 1677 aa16■□□□□ 0.15
HIF3A-201ENST00000244302 FAM161AQ3B820 660 aa16■□□□□ 0.15
HIF3A-201ENST00000244302 C3orf67Q6ZVT6 689 aa16■□□□□ 0.15
HIF3A-201ENST00000244302 RHPN1Q8TCX5 695 aa16■□□□□ 0.15
HIF3A-201ENST00000244302 PUS3Q9BZE2 481 aaKnown RBP16■□□□□ 0.15
HIF3A-201ENST00000244302 ZPR1O75312 459 aa15.99■□□□□ 0.15
HIF3A-201ENST00000244302 RFC4P35249 363 aa15.99■□□□□ 0.15
HIF3A-201ENST00000244302 LRRCC1Q9C099 1032 aa15.99■□□□□ 0.15
HIF3A-201ENST00000244302 ZBTB47Q9UFB7 747 aaPredicted RBP15.98■□□□□ 0.15
HIF3A-201ENST00000244302 SRCAPQ6ZRS2 3230 aa15.98■□□□□ 0.15
HIF3A-201ENST00000244302 NTSR2O95665 410 aa15.98■□□□□ 0.15
HIF3A-201ENST00000244302 OS9Q13438 667 aaPredicted RBP15.98■□□□□ 0.15
HIF3A-201ENST00000244302 C8orf34Q49A92 452 aa15.98■□□□□ 0.15
HIF3A-201ENST00000244302 ERFEQ4G0M1 354 aa15.98■□□□□ 0.15
HIF3A-201ENST00000244302 LRRC24Q50LG9 513 aa15.98■□□□□ 0.15
HIF3A-201ENST00000244302 UTP14AQ9BVJ6 771 aaKnown RBP15.98■□□□□ 0.15
HIF3A-201ENST00000244302 GREM2Q9H772 168 aa15.98■□□□□ 0.15
HIF3A-201ENST00000244302 TTLL11Q8NHH1 800 aa15.97■□□□□ 0.15
HIF3A-201ENST00000244302 USP42Q9H9J4 1324 aaKnown RBP15.97■□□□□ 0.15
HIF3A-201ENST00000244302 SEC24BO95487 1268 aa15.97■□□□□ 0.15
HIF3A-201ENST00000244302 CLEC4GQ6UXB4 293 aa15.97■□□□□ 0.15
HIF3A-201ENST00000244302 BACH2Q9BYV9 841 aa15.97■□□□□ 0.15
HIF3A-201ENST00000244302 TFCP2L1Q9NZI6 479 aa15.97■□□□□ 0.15
HIF3A-201ENST00000244302 CSF1RP07333 972 aa15.96■□□□□ 0.15
HIF3A-201ENST00000244302 GSPT1P15170 499 aaKnown RBP15.96■□□□□ 0.15
HIF3A-201ENST00000244302 AKT1S1Q96B36 256 aa15.96■□□□□ 0.15
HIF3A-201ENST00000244302 CAMKK2Q96RR4 588 aa15.96■□□□□ 0.15
HIF3A-201ENST00000244302 ANO8Q9HCE9 1232 aaPredicted RBP15.96■□□□□ 0.15
HIF3A-201ENST00000244302 COL23A1Q86Y22 540 aaPredicted RBP15.95■□□□□ 0.14
HIF3A-201ENST00000244302 SEC31BQ9NQW1 1179 aa15.95■□□□□ 0.14
HIF3A-201ENST00000244302 HDAC5Q9UQL6 1122 aa15.95■□□□□ 0.14
HIF3A-201ENST00000244302 SH3TC1Q8TE82 1336 aa15.95■□□□□ 0.14
HIF3A-201ENST00000244302 GYS1P13807 737 aa15.95■□□□□ 0.14
HIF3A-201ENST00000244302 G3BP1Q13283 466 aaKnown RBP eCLIP15.95■□□□□ 0.14
HIF3A-201ENST00000244302 NFIXQ14938 502 aa15.95■□□□□ 0.14
HIF3A-201ENST00000244302 PDGFDQ9GZP0 370 aaPredicted RBP15.95■□□□□ 0.14
HIF3A-201ENST00000244302 CCDC8Q9H0W5 538 aaPredicted RBP15.95■□□□□ 0.14
HIF3A-201ENST00000244302 COPRSQ9NQ92 184 aa15.95■□□□□ 0.14
HIF3A-201ENST00000244302 TLR7Q9NYK1 1049 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms