RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 NBPF4Q96M43 638 aa14.78□□□□□ -0.04
NUP88-201ENST00000225696 TM6SF1Q9BZW5 370 aa14.78□□□□□ -0.04
NUP88-201ENST00000225696 SH2B1Q9NRF2 756 aaPredicted RBP14.78□□□□□ -0.04
NUP88-201ENST00000225696 BABAM1Q9NWV8 329 aa14.78□□□□□ -0.04
NUP88-201ENST00000225696 DACT1Q9NYF0 836 aa14.78□□□□□ -0.04
NUP88-201ENST00000225696 PLEKHG1Q9ULL1 1385 aa14.77□□□□□ -0.04
NUP88-201ENST00000225696 A0A0D9SFI3 127 aa14.77□□□□□ -0.04
NUP88-201ENST00000225696 SPDYE4A6NLX3 237 aa14.77□□□□□ -0.04
NUP88-201ENST00000225696 EAF2Q96CJ1 260 aaPredicted RBP14.77□□□□□ -0.04
NUP88-201ENST00000225696 ZSCAN31Q96LW9 406 aaPredicted RBP14.77□□□□□ -0.04
NUP88-201ENST00000225696 CCDC8Q9H0W5 538 aaPredicted RBP14.77□□□□□ -0.04
NUP88-201ENST00000225696 SETD1BQ9UPS6 1966 aaKnown RBP14.77□□□□□ -0.04
NUP88-201ENST00000225696 SLC27A2O14975 620 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 SASH1O94885 1247 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 IFIT2P09913 472 aaKnown RBP14.77□□□□□ -0.05
NUP88-201ENST00000225696 STK3Q13188 491 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 LARP1Q6PKG0 1096 aaKnown RBP14.77□□□□□ -0.05
NUP88-201ENST00000225696 PLPPR3Q6T4P5 718 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 MPRIPQ6WCQ1 1025 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 RUFY2Q8WXA3 655 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 MAP4K1Q92918 833 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 KAZALD1Q96I82 304 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 MAP3K2Q9Y2U5 619 aa14.77□□□□□ -0.05
NUP88-201ENST00000225696 ADAMTSL3P82987 1691 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 KCNJ4P48050 445 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 MTX1Q13505 466 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 MAP3K11Q16584 847 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 ANO6Q4KMQ2 910 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 C14orf37Q86TY3 774 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 FAM200AQ8TCP9 573 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 NUP62CLQ9H1M0 184 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 CBX8Q9HC52 389 aa14.76□□□□□ -0.05
NUP88-201ENST00000225696 CHGBP05060 677 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 TOB2Q14106 344 aaPredicted RBP14.75□□□□□ -0.05
NUP88-201ENST00000225696 HSP90AB4PQ58FF6 505 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 CCDC186Q7Z3E2 898 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 KLHDC4Q8TBB5 520 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 EDC3Q96F86 508 aaKnown RBP14.75□□□□□ -0.05
NUP88-201ENST00000225696 C9orf78Q9NZ63 289 aaPredicted RBP14.75□□□□□ -0.05
NUP88-201ENST00000225696 MARF1Q9Y4F3 1742 aaKnown RBP14.75□□□□□ -0.05
NUP88-201ENST00000225696 ZKSCAN1P17029 563 aaPredicted RBP14.75□□□□□ -0.05
NUP88-201ENST00000225696 KRT85P78386 507 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 DIP2AQ14689 1571 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 ZNF589Q86UQ0 364 aaPredicted RBP14.75□□□□□ -0.05
NUP88-201ENST00000225696 EVI5LQ96CN4 794 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 BOLA2Q9H3K6 86 aa14.75□□□□□ -0.05
NUP88-201ENST00000225696 LRRC59Q96AG4 307 aaKnown RBP14.74□□□□□ -0.05
NUP88-201ENST00000225696 SIL1Q9H173 461 aa14.74□□□□□ -0.05
NUP88-201ENST00000225696 NPHP4O75161 1426 aaPredicted RBP14.74□□□□□ -0.05
NUP88-201ENST00000225696 BTBD11A6QL63 1104 aa14.74□□□□□ -0.05
NUP88-201ENST00000225696 JAK2O60674 1132 aa14.74□□□□□ -0.05
NUP88-201ENST00000225696 NR1I2O75469 434 aa14.74□□□□□ -0.05
NUP88-201ENST00000225696 U2AF2P26368 475 aaKnown RBP eCLIP14.74□□□□□ -0.056e-6■□□□□ 8.6
NUP88-201ENST00000225696 NAA30Q147X3 362 aaPredicted RBP14.74□□□□□ -0.05
NUP88-201ENST00000225696 DDX11Q96FC9 970 aa14.74□□□□□ -0.05
NUP88-201ENST00000225696 PGBD1Q96JS3 809 aa14.74□□□□□ -0.05
NUP88-201ENST00000225696 BCL11BQ9C0K0 894 aaPredicted RBP14.74□□□□□ -0.05
NUP88-201ENST00000225696 DMTNQ08495 405 aa14.73□□□□□ -0.05
NUP88-201ENST00000225696 SUCLG2Q96I99 432 aa14.73□□□□□ -0.05
NUP88-201ENST00000225696 TNMDQ9H2S6 317 aa14.73□□□□□ -0.05
NUP88-201ENST00000225696 NDUFB9Q9Y6M9 179 aa14.73□□□□□ -0.05
NUP88-201ENST00000225696 PDCL2Q8N4E4 241 aa14.73□□□□□ -0.05
NUP88-201ENST00000225696 LEO1Q8WVC0 666 aaPredicted RBP14.73□□□□□ -0.05
NUP88-201ENST00000225696 SPATA32Q96LK8 384 aa14.73□□□□□ -0.05
NUP88-201ENST00000225696 C16orf45Q96MC5 204 aaPredicted RBP14.73□□□□□ -0.05
NUP88-201ENST00000225696 BICC1Q9H694 974 aaKnown RBP14.73□□□□□ -0.05
NUP88-201ENST00000225696 ELP1O95163 1332 aa14.72□□□□□ -0.05
NUP88-201ENST00000225696 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.72□□□□□ -0.05
NUP88-201ENST00000225696 CTIFO43310 598 aaKnown RBP14.72□□□□□ -0.05
NUP88-201ENST00000225696 ANKRD7Q92527 254 aa14.72□□□□□ -0.05
NUP88-201ENST00000225696 DNAJC25Q9H1X3 360 aa14.72□□□□□ -0.05
NUP88-201ENST00000225696 A0A087WWV3 80 aa14.71□□□□□ -0.05
NUP88-201ENST00000225696 RPS6KB1P23443 525 aa14.71□□□□□ -0.05
NUP88-201ENST00000225696 CCDC144BQ3MJ40 725 aa14.71□□□□□ -0.05
NUP88-201ENST00000225696 CCDC144CPQ8IYA2 1237 aa14.71□□□□□ -0.05
NUP88-201ENST00000225696 COL15A1P39059 1388 aa14.71□□□□□ -0.05
NUP88-201ENST00000225696 TEFQ10587 303 aa14.71□□□□□ -0.05
NUP88-201ENST00000225696 BLOC1S2Q6QNY1 142 aa14.71□□□□□ -0.05
NUP88-201ENST00000225696 RBM33Q96EV2 1170 aaKnown RBP14.71□□□□□ -0.05
NUP88-201ENST00000225696 DBF4Q9UBU7 674 aaPredicted RBP14.71□□□□□ -0.05
NUP88-201ENST00000225696 IGSF3O75054 1194 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 HOXB7P09629 217 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 ZNF75DP51815 510 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 AIMP1Q12904 312 aaKnown RBP14.7□□□□□ -0.06
NUP88-201ENST00000225696 ARID5BQ14865 1188 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 ZSCAN25Q6NSZ9 544 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 KSR2Q6VAB6 950 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 PLA2G4DQ86XP0 818 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 DRC7Q8IY82 874 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 GPATCH3Q96I76 525 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 FSD1Q9BTV5 496 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 TRIM5Q9C035 493 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 MED1Q15648 1581 aaPredicted RBP14.7□□□□□ -0.06
NUP88-201ENST00000225696 GOLGA6L6A8MZA4 724 aa14.7□□□□□ -0.06
NUP88-201ENST00000225696 GIGYF1O75420 1035 aaPredicted RBP14.7□□□□□ -0.06
NUP88-201ENST00000225696 NCBP1Q09161 790 aaKnown RBP14.7□□□□□ -0.06
NUP88-201ENST00000225696 ZNF530Q6P9A1 599 aaPredicted RBP14.7□□□□□ -0.06
NUP88-201ENST00000225696 RBM43Q6ZSC3 357 aaKnown RBP14.7□□□□□ -0.06
NUP88-201ENST00000225696 CACTINQ8WUQ7 758 aaKnown RBP14.7□□□□□ -0.06
NUP88-201ENST00000225696 CLSTN2Q9H4D0 955 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms